SNP Detail Info-rs6929418

Organism: Homo sapiens

Alleles: A>G

Gene : Feature

NCR2 : Intron Variant

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G=0170 (5096/29962,GnomAD)
G=0164 (4786/29118,TOPMED)
G=0133 (666/5008,1000G)
G=0238 (917/3854,ALSPAC)
G=0245 (910/3708,TWINSUK)

Position: chr6:41339856 (GRCh38.p7) (6p21.1)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 9 Enhancers around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 6	NC_000006.12:g.41339856A>G
GRCh37.p13 chr 6	NC_000006.11:g.41307594A>G

Molecule type	Change	Amino acid[Codon]	SO Term
NCR2 transcript variant 2	NM_001199509.1:c.	N/A	Intron Variant
NCR2 transcript variant 3	NM_001199510.1:c.	N/A	Intron Variant
NCR2 transcript variant 1	NM_004828.3:c.	N/A	Intron Variant
NCR2 transcript variant X1	XM_017011500.1:c.	N/A	Intron Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.949	G=0.051
1000Genomes	American	Sub	694	A=0.880	G=0.120
1000Genomes	East Asian	Sub	1008	A=0.885	G=0.115
1000Genomes	Europe	Sub	1006	A=0.789	G=0.211
1000Genomes	Global	Study-wide	5008	A=0.867	G=0.133
1000Genomes	South Asian	Sub	978	A=0.810	G=0.190
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.762	G=0.238
The Genome Aggregation Database	African	Sub	8724	A=0.926	G=0.074
The Genome Aggregation Database	American	Sub	838	A=0.890	G=0.110
The Genome Aggregation Database	East Asian	Sub	1620	A=0.923	G=0.077
The Genome Aggregation Database	Europe	Sub	18480	A=0.775	G=0.224
The Genome Aggregation Database	Global	Study-wide	29962	A=0.829	G=0.170
The Genome Aggregation Database	Other	Sub	300	A=0.710	G=0.290
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.835	G=0.164
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.755	G=0.245

PMID	Title	Author	Journal
21314694	Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.	Kendler KS	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs6929418	0.000315	alcohol dependence	21314694

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr6	41300110	41300182	E070	-7412
chr6	41300330	41300573	E070	-7021
chr6	41303258	41303353	E070	-4241
chr6	41303402	41303512	E070	-4082
chr6	41303667	41303713	E070	-3881
chr6	41303865	41303926	E070	-3668
chr6	41303972	41304056	E070	-3538
chr6	41304085	41304135	E070	-3459
chr6	41304677	41304844	E070	-2750

rs6929418