rs6936076

Homo sapiens
G>A
None
Check p-value
SNV (Single Nucleotide Variation)
A=0310 (9283/29902,GnomAD)
A=0338 (9854/29118,TOPMED)
A=0483 (2417/5008,1000G)
A=0138 (530/3854,ALSPAC)
A=0127 (470/3708,TWINSUK)
chr6:7063038 (GRCh38.p7) (6p25.1)
AD
GWASdb2
1   publication(s)
See rs on genome
10 Enhancers around
16 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 6NC_000006.12:g.7063038G>A
GRCh37.p13 chr 6NC_000006.11:g.7063271G>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.386A=0.614
1000GenomesAmericanSub694G=0.670A=0.330
1000GenomesEast AsianSub1008G=0.170A=0.830
1000GenomesEuropeSub1006G=0.850A=0.150
1000GenomesGlobalStudy-wide5008G=0.517A=0.483
1000GenomesSouth AsianSub978G=0.610A=0.390
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.862A=0.138
The Genome Aggregation DatabaseAfricanSub8686G=0.458A=0.542
The Genome Aggregation DatabaseAmericanSub836G=0.660A=0.340
The Genome Aggregation DatabaseEast AsianSub1608G=0.159A=0.841
The Genome Aggregation DatabaseEuropeSub18472G=0.844A=0.155
The Genome Aggregation DatabaseGlobalStudy-wide29902G=0.689A=0.310
The Genome Aggregation DatabaseOtherSub300G=0.770A=0.230
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.661A=0.338
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.873A=0.127
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs69360760.000461alcohol dependence21314694

eQTL of rs6936076 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs6936076 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr670417387042291E069-20980
chr670423647042478E069-20793
chr670425817043648E069-19623
chr670534767053621E069-9650
chr670860957086647E06922824
chr670425817043648E071-19623
chr670860957086647E07122824
chr670425817043648E072-19623
chr670860957086647E07322824
chr670423647042478E074-20793





Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr670510327053413E067-9858
chr671067797110126E06743508
chr670510327053413E068-9858
chr671067797110126E06843508
chr670510327053413E069-9858
chr671067797110126E06943508
chr670510327053413E071-9858
chr671067797110126E07143508
chr670510327053413E072-9858
chr671067797110126E07243508
chr670510327053413E073-9858
chr671067797110126E07343508
chr670510327053413E074-9858
chr671067797110126E07443508
chr670510327053413E082-9858
chr671067797110126E08243508