SNP Detail Info-rs6959898

Organism: Homo sapiens

Alleles: A>G

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A==0034 (1039/29922,GnomAD)
A==0043 (1263/29118,TOPMED)
A==0017 (83/5008,1000G)
A==0062 (239/3854,ALSPAC)
A==0054 (202/3708,TWINSUK)

Position: chr7:8970692 (GRCh38.p7) (7p21.3)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 5 Enhancers around

Promoter: 3 Promoters around

Sequence Name	Change(s)
GRCh38.p7 chr 7	NC_000007.14:g.8970692A>G
GRCh37.p13 chr 7	NC_000007.13:g.9010322A>G

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.001	G=0.999
1000Genomes	American	Sub	694	A=0.030	G=0.970
1000Genomes	East Asian	Sub	1008	A=0.000	G=1.000
1000Genomes	Europe	Sub	1006	A=0.049	G=0.951
1000Genomes	Global	Study-wide	5008	A=0.017	G=0.983
1000Genomes	South Asian	Sub	978	A=0.010	G=0.990
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.062	G=0.938
The Genome Aggregation Database	African	Sub	8730	A=0.012	G=0.988
The Genome Aggregation Database	American	Sub	836	A=0.020	G=0.980
The Genome Aggregation Database	East Asian	Sub	1614	A=0.000	G=1.000
The Genome Aggregation Database	Europe	Sub	18440	A=0.049	G=0.950
The Genome Aggregation Database	Global	Study-wide	29922	A=0.034	G=0.965
The Genome Aggregation Database	Other	Sub	302	A=0.040	G=0.960
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.043	G=0.956
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.054	G=0.946

PMID	Title	Author	Journal
19581569	Genome-wide association study of alcohol dependence.	Treutlein J	Arch Gen Psychiatry

SNP ID	p-value	Traits	Study
rs6959898	5.36E-05	alcohol dependence	19581569

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr7	9037273	9037369	E067	26951
chr7	9037846	9037890	E067	27524
chr7	9038631	9038694	E067	28309
chr7	9038631	9038694	E069	28309
chr7	9037093	9037156	E074	26771

Chromosome	Start	End	Region	Distance(-/+:Up/Downstream)
chr7	9038377	9038626	E071	28055
chr7	9038377	9038626	E072	28055
chr7	9038377	9038626	E074	28055

rs6959898