rs6989475

Homo sapiens
A>G
ST3GAL1 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
G=0055 (1644/29816,GnomAD)
G=0065 (1895/29118,TOPMED)
G=0035 (175/5008,1000G)
G=0094 (363/3854,ALSPAC)
G=0095 (353/3708,TWINSUK)
chr8:133507022 (GRCh38.p7) (8q24.22)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 8NC_000008.11:g.133507022A>G
GRCh37.p13 chr 8NC_000008.10:g.134519265A>G

Gene: ST3GAL1, ST3 beta-galactoside alpha-2,3-sialyltransferase 1(minus strand)

Molecule type Change Amino acid[Codon] SO Term
ST3GAL1 transcript variant 1NM_003033.3:c.N/AIntron Variant
ST3GAL1 transcript variant 2NM_173344.2:c.N/AIntron Variant
ST3GAL1 transcript variant X2XM_006716617.1:c.N/AIntron Variant
ST3GAL1 transcript variant X1XM_011517225.1:c.N/AIntron Variant
ST3GAL1 transcript variant X3XM_017013736.1:c.N/AIntron Variant
ST3GAL1 transcript variant X4XM_017013737.1:c.N/AIntron Variant
ST3GAL1 transcript variant X5XM_005251025.4:c.N/AGenic Upstream Transcript Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.966G=0.034
1000GenomesAmericanSub694A=0.940G=0.060
1000GenomesEast AsianSub1008A=1.000G=0.000
1000GenomesEuropeSub1006A=0.923G=0.077
1000GenomesGlobalStudy-wide5008A=0.965G=0.035
1000GenomesSouth AsianSub978A=0.990G=0.010
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.906G=0.094
The Genome Aggregation DatabaseAfricanSub8712A=0.959G=0.041
The Genome Aggregation DatabaseAmericanSub830A=0.940G=0.060
The Genome Aggregation DatabaseEast AsianSub1622A=0.999G=0.001
The Genome Aggregation DatabaseEuropeSub18350A=0.934G=0.065
The Genome Aggregation DatabaseGlobalStudy-wide29816A=0.944G=0.055
The Genome Aggregation DatabaseOtherSub302A=0.920G=0.080
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.934G=0.065
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.905G=0.095
PMID Title Author Journal
21956439Genome-wide association study of alcohol dependence implicates KIAA0040 on chromosome 1q.Zuo LNeuropsychopharmacology

P-Value

SNP ID p-value Traits Study
rs69894755E-06alcohol dependence21956439

eQTL of rs6989475 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs6989475 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr8134496086134496406E067-22859
chr8134496430134497913E067-21352
chr8134497914134497983E067-21282
chr8134498003134499171E067-20094
chr8134510012134513690E067-5575
chr8134513693134513765E067-5500
chr8134514035134514206E067-5059
chr8134515693134516026E067-3239
chr8134516036134517058E067-2207
chr8134517186134517936E067-1329
chr8134519966134520506E067701
chr8134520558134520687E0671293
chr8134520803134520877E0671538
chr8134520924134521025E0671659
chr8134521110134521246E0671845
chr8134521564134521647E0672299
chr8134521727134521814E0672462
chr8134521853134521988E0672588
chr8134530149134530258E06710884
chr8134530276134530662E06711011
chr8134530712134531174E06711447
chr8134531195134531245E06711930
chr8134531315134531375E06712050
chr8134531424134531711E06712159
chr8134531869134531924E06712604
chr8134532028134532303E06712763
chr8134548818134549010E06729553
chr8134549220134549269E06729955
chr8134549592134549691E06730327
chr8134549698134550287E06730433
chr8134550391134550497E06731126
chr8134550819134550904E06731554
chr8134551002134551721E06731737
chr8134551872134551984E06732607
chr8134552189134552268E06732924
chr8134552316134552875E06733051
chr8134553556134553844E06734291
chr8134554099134554186E06734834
chr8134559561134559634E06740296
chr8134559688134559738E06740423
chr8134559748134559814E06740483
chr8134559821134561106E06740556
chr8134561137134561296E06741872
chr8134496430134497913E068-21352
chr8134497914134497983E068-21282
chr8134498003134499171E068-20094
chr8134499236134499366E068-19899
chr8134499628134499708E068-19557
chr8134510012134513690E068-5575
chr8134513693134513765E068-5500
chr8134514035134514206E068-5059
chr8134514242134514579E068-4686
chr8134514606134514669E068-4596
chr8134514716134514831E068-4434
chr8134514853134514903E068-4362
chr8134514905134515230E068-4035
chr8134515241134515382E068-3883
chr8134515384134515468E068-3797
chr8134515572134515614E068-3651
chr8134515693134516026E068-3239
chr8134516036134517058E068-2207
chr8134517186134517936E068-1329
chr8134519966134520506E068701
chr8134520558134520687E0681293
chr8134520803134520877E0681538
chr8134520924134521025E0681659
chr8134521110134521246E0681845
chr8134521564134521647E0682299
chr8134521727134521814E0682462
chr8134530149134530258E06810884
chr8134530276134530662E06811011
chr8134530712134531174E06811447
chr8134531195134531245E06811930
chr8134531315134531375E06812050
chr8134531424134531711E06812159
chr8134531869134531924E06812604
chr8134532028134532303E06812763
chr8134532327134533115E06813062
chr8134534257134535452E06814992
chr8134535561134535651E06816296
chr8134537934134538073E06818669
chr8134538124134539643E06818859
chr8134546617134547465E06827352
chr8134549220134549269E06829955
chr8134549592134549691E06830327
chr8134549698134550287E06830433
chr8134550391134550497E06831126
chr8134550819134550904E06831554
chr8134551002134551721E06831737
chr8134552316134552875E06833051
chr8134559821134561106E06840556
chr8134563875134565053E06844610
chr8134565098134565174E06845833
chr8134565180134565293E06845915
chr8134476246134476586E069-42679
chr8134492057134492422E069-26843
chr8134492583134492646E069-26619
chr8134496430134497913E069-21352
chr8134497914134497983E069-21282
chr8134498003134499171E069-20094
chr8134500733134500913E069-18352
chr8134500954134501058E069-18207
chr8134510012134513690E069-5575
chr8134513693134513765E069-5500
chr8134514035134514206E069-5059
chr8134514242134514579E069-4686
chr8134514606134514669E069-4596
chr8134514716134514831E069-4434
chr8134514853134514903E069-4362
chr8134514905134515230E069-4035
chr8134515241134515382E069-3883
chr8134515384134515468E069-3797
chr8134515572134515614E069-3651
chr8134515693134516026E069-3239
chr8134516036134517058E069-2207
chr8134517186134517936E069-1329
chr8134519966134520506E069701
chr8134520558134520687E0691293
chr8134520803134520877E0691538
chr8134520924134521025E0691659
chr8134521110134521246E0691845
chr8134521564134521647E0692299
chr8134521727134521814E0692462
chr8134521853134521988E0692588
chr8134537934134538073E06918669
chr8134538124134539643E06918859
chr8134539682134539813E06920417
chr8134539863134540194E06920598
chr8134549220134549269E06929955
chr8134549592134549691E06930327
chr8134549698134550287E06930433
chr8134550819134550904E06931554
chr8134551002134551721E06931737
chr8134551872134551984E06932607
chr8134552189134552268E06932924
chr8134552316134552875E06933051
chr8134559821134561106E06940556
chr8134563875134565053E06944610
chr8134565098134565174E06945833
chr8134565180134565293E06945915
chr8134565688134565778E06946423
chr8134476246134476586E070-42679
chr8134528857134529474E0709592
chr8134476246134476586E071-42679
chr8134476722134477003E071-42262
chr8134496430134497913E071-21352
chr8134497914134497983E071-21282
chr8134498003134499171E071-20094
chr8134501136134501438E071-17827
chr8134501439134501545E071-17720
chr8134501560134501717E071-17548
chr8134501789134502483E071-16782
chr8134505138134505849E071-13416
chr8134506803134506878E071-12387
chr8134506896134507130E071-12135
chr8134510012134513690E071-5575
chr8134513693134513765E071-5500
chr8134514035134514206E071-5059
chr8134514242134514579E071-4686
chr8134514606134514669E071-4596
chr8134514716134514831E071-4434
chr8134514853134514903E071-4362
chr8134514905134515230E071-4035
chr8134515241134515382E071-3883
chr8134515384134515468E071-3797
chr8134515572134515614E071-3651
chr8134515693134516026E071-3239
chr8134516036134517058E071-2207
chr8134517186134517936E071-1329
chr8134519877134519927E071612
chr8134519966134520506E071701
chr8134520558134520687E0711293
chr8134520803134520877E0711538
chr8134520924134521025E0711659
chr8134528857134529474E0719592
chr8134532327134533115E07113062
chr8134538124134539643E07118859
chr8134539682134539813E07120417
chr8134542826134542866E07123561
chr8134542952134543206E07123687
chr8134549220134549269E07129955
chr8134549592134549691E07130327
chr8134549698134550287E07130433
chr8134550391134550497E07131126
chr8134550819134550904E07131554
chr8134551002134551721E07131737
chr8134551872134551984E07132607
chr8134552189134552268E07132924
chr8134552316134552875E07133051
chr8134553429134553535E07134164
chr8134553556134553844E07134291
chr8134559821134561106E07140556
chr8134562500134562819E07143235
chr8134562893134563005E07143628
chr8134563126134563270E07143861
chr8134563875134565053E07144610
chr8134565098134565174E07145833
chr8134565180134565293E07145915
chr8134476246134476586E072-42679
chr8134494350134495281E072-23984
chr8134495914134496012E072-23253
chr8134496086134496406E072-22859
chr8134496430134497913E072-21352
chr8134497914134497983E072-21282
chr8134498003134499171E072-20094
chr8134499236134499366E072-19899
chr8134499628134499708E072-19557
chr8134499803134499896E072-19369
chr8134500733134500913E072-18352
chr8134500954134501058E072-18207
chr8134501136134501438E072-17827
chr8134501439134501545E072-17720
chr8134501560134501717E072-17548
chr8134501789134502483E072-16782
chr8134502611134502707E072-16558
chr8134502788134502838E072-16427
chr8134502903134502995E072-16270
chr8134503033134503083E072-16182
chr8134505138134505849E072-13416
chr8134506288134506800E072-12465
chr8134506803134506878E072-12387
chr8134506896134507130E072-12135
chr8134510012134513690E072-5575
chr8134513693134513765E072-5500
chr8134514035134514206E072-5059
chr8134514242134514579E072-4686
chr8134515693134516026E072-3239
chr8134516036134517058E072-2207
chr8134517186134517936E072-1329
chr8134519966134520506E072701
chr8134520558134520687E0721293
chr8134520803134520877E0721538
chr8134520924134521025E0721659
chr8134521110134521246E0721845
chr8134521564134521647E0722299
chr8134521727134521814E0722462
chr8134521853134521988E0722588
chr8134526431134526565E0727166
chr8134526763134526843E0727498
chr8134526896134526947E0727631
chr8134527030134527080E0727765
chr8134527190134527273E0727925
chr8134527349134527477E0728084
chr8134527587134527688E0728322
chr8134530149134530258E07210884
chr8134530276134530662E07211011
chr8134546617134547465E07227352
chr8134549220134549269E07229955
chr8134549592134549691E07230327
chr8134549698134550287E07230433
chr8134550391134550497E07231126
chr8134551002134551721E07231737
chr8134551872134551984E07232607
chr8134552189134552268E07232924
chr8134552316134552875E07233051
chr8134553429134553535E07234164
chr8134553556134553844E07234291
chr8134554099134554186E07234834
chr8134554342134554392E07235077
chr8134559821134561106E07240556
chr8134565688134565778E07246423
chr8134472378134472485E073-46780
chr8134472578134472674E073-46591
chr8134472755134472875E073-46390
chr8134497914134497983E073-21282
chr8134498003134499171E073-20094
chr8134504976134505131E073-14134
chr8134510012134513690E073-5575
chr8134513693134513765E073-5500
chr8134514035134514206E073-5059
chr8134516036134517058E073-2207
chr8134517186134517936E073-1329
chr8134519877134519927E073612
chr8134519966134520506E073701
chr8134520558134520687E0731293
chr8134520803134520877E0731538
chr8134520924134521025E0731659
chr8134521110134521246E0731845
chr8134521564134521647E0732299
chr8134521727134521814E0732462
chr8134528857134529474E0739592
chr8134529829134529883E07310564
chr8134529904134529958E07310639
chr8134530028134530068E07310763
chr8134530149134530258E07310884
chr8134530276134530662E07311011
chr8134530712134531174E07311447
chr8134531195134531245E07311930
chr8134531315134531375E07312050
chr8134531424134531711E07312159
chr8134532327134533115E07313062
chr8134534257134535452E07314992
chr8134535561134535651E07316296
chr8134546617134547465E07327352
chr8134549592134549691E07330327
chr8134549698134550287E07330433
chr8134550391134550497E07331126
chr8134550819134550904E07331554
chr8134551002134551721E07331737
chr8134551872134551984E07332607
chr8134552189134552268E07332924
chr8134552316134552875E07333051
chr8134553429134553535E07334164
chr8134553556134553844E07334291
chr8134559748134559814E07340483
chr8134559821134561106E07340556
chr8134492057134492422E074-26843
chr8134496430134497913E074-21352
chr8134497914134497983E074-21282
chr8134498003134499171E074-20094
chr8134510012134513690E074-5575
chr8134513693134513765E074-5500
chr8134514035134514206E074-5059
chr8134514242134514579E074-4686
chr8134514606134514669E074-4596
chr8134514716134514831E074-4434
chr8134514853134514903E074-4362
chr8134514905134515230E074-4035
chr8134515241134515382E074-3883
chr8134515384134515468E074-3797
chr8134515572134515614E074-3651
chr8134515693134516026E074-3239
chr8134516036134517058E074-2207
chr8134517186134517936E074-1329
chr8134549592134549691E07430327
chr8134549698134550287E07430433
chr8134550391134550497E07431126
chr8134550819134550904E07431554
chr8134551002134551721E07431737
chr8134552189134552268E07432924
chr8134552316134552875E07433051
chr8134553429134553535E07434164
chr8134559267134559455E07440002
chr8134559561134559634E07440296
chr8134559688134559738E07440423
chr8134559748134559814E07440483
chr8134559821134561106E07440556
chr8134565098134565174E07445833
chr8134565180134565293E07445915
chr8134491947134492005E081-27260
chr8134492057134492422E081-26843
chr8134535561134535651E08116296
chr8134552316134552875E08133051
chr8134530149134530258E08210884
chr8134530276134530662E08211011
chr8134530712134531174E08211447
chr8134531195134531245E08211930
chr8134531315134531375E08212050
chr8134531424134531711E08212159
chr8134535561134535651E08216296
chr8134552189134552268E08232924
chr8134552316134552875E08233051