rs7014855

Homo sapiens
C>T
TRAPPC9 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
T=0060 (1813/29962,GnomAD)
T=0079 (2315/29118,TOPMED)
T=0075 (376/5008,1000G)
T=0022 (86/3854,ALSPAC)
T=0025 (91/3708,TWINSUK)
chr8:140247165 (GRCh38.p7) (8q24.3)
AD
GWASdb2
1   publication(s)
See rs on genome
263 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 8NC_000008.11:g.140247165C>T
GRCh37.p13 chr 8NC_000008.10:g.141257264C>T
TRAPPC9 RefSeqGeneNG_016478.2:g.216415G>A

Gene: TRAPPC9, trafficking protein particle complex 9(minus strand)

Molecule type Change Amino acid[Codon] SO Term
TRAPPC9 transcript variant 2NM_001160372.3:c.N/AIntron Variant
TRAPPC9 transcript variant 3NM_001321646.1:c.N/AIntron Variant
TRAPPC9 transcript variant 1NM_031466.7:c.N/AIntron Variant
TRAPPC9 transcript variant X1XM_011517326.2:c.N/AIntron Variant
TRAPPC9 transcript variant X2XM_011517328.2:c.N/AIntron Variant
TRAPPC9 transcript variant X6XM_011517330.2:c.N/AIntron Variant
TRAPPC9 transcript variant X3XM_017013893.1:c.N/AIntron Variant
TRAPPC9 transcript variant X5XM_017013894.1:c.N/AIntron Variant
TRAPPC9 transcript variant X4XR_928355.2:n.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.831T=0.169
1000GenomesAmericanSub694C=0.960T=0.040
1000GenomesEast AsianSub1008C=0.982T=0.018
1000GenomesEuropeSub1006C=0.969T=0.031
1000GenomesGlobalStudy-wide5008C=0.925T=0.075
1000GenomesSouth AsianSub978C=0.920T=0.080
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.978T=0.022
The Genome Aggregation DatabaseAfricanSub8714C=0.849T=0.151
The Genome Aggregation DatabaseAmericanSub838C=0.970T=0.030
The Genome Aggregation DatabaseEast AsianSub1620C=0.982T=0.018
The Genome Aggregation DatabaseEuropeSub18488C=0.976T=0.023
The Genome Aggregation DatabaseGlobalStudy-wide29962C=0.939T=0.060
The Genome Aggregation DatabaseOtherSub302C=0.960T=0.040
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.920T=0.079
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.975T=0.025
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs70148550.000577alcohol dependence21314694

eQTL of rs7014855 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs7014855 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr8141208807141209148E067-48116
chr8141209178141209576E067-47688
chr8141224684141225301E067-31963
chr8141250486141250548E067-6716
chr8141272545141273112E06715281
chr8141273216141273364E06715952
chr8141273369141273453E06716105
chr8141299865141300177E06742601
chr8141300256141300363E06742992
chr8141300369141300478E06743105
chr8141300534141300584E06743270
chr8141300586141300766E06743322
chr8141301053141301163E06743789
chr8141301185141301248E06743921
chr8141301301141301517E06744037
chr8141301637141301687E06744373
chr8141301695141301860E06744431
chr8141302036141302146E06744772
chr8141305345141305427E06748081
chr8141305467141305517E06748203
chr8141305699141305864E06748435
chr8141247966141250394E068-6870
chr8141250486141250548E068-6716
chr8141272370141272544E06815106
chr8141273216141273364E06815952
chr8141273369141273453E06816105
chr8141299865141300177E06842601
chr8141300256141300363E06842992
chr8141300369141300478E06843105
chr8141300534141300584E06843270
chr8141300586141300766E06843322
chr8141301053141301163E06843789
chr8141301185141301248E06843921
chr8141301301141301517E06844037
chr8141305345141305427E06848081
chr8141305467141305517E06848203
chr8141208508141208576E069-48688
chr8141208617141208667E069-48597
chr8141208668141208755E069-48509
chr8141208807141209148E069-48116
chr8141224684141225301E069-31963
chr8141250486141250548E069-6716
chr8141296215141296603E06938951
chr8141299865141300177E06942601
chr8141300256141300363E06942992
chr8141300369141300478E06943105
chr8141300534141300584E06943270
chr8141300586141300766E06943322
chr8141301053141301163E06943789
chr8141301185141301248E06943921
chr8141301301141301517E06944037
chr8141301637141301687E06944373
chr8141301695141301860E06944431
chr8141207420141208181E070-49083
chr8141247966141250394E070-6870
chr8141250486141250548E070-6716
chr8141271903141272019E07014639
chr8141272151141272248E07014887
chr8141272297141272354E07015033
chr8141272370141272544E07015106
chr8141272545141273112E07015281
chr8141273216141273364E07015952
chr8141273369141273453E07016105
chr8141273735141273837E07016471
chr8141273945141274022E07016681
chr8141274260141274637E07016996
chr8141295175141295336E07037911
chr8141295407141295534E07038143
chr8141295567141295675E07038303
chr8141301053141301163E07043789
chr8141301185141301248E07043921
chr8141301301141301517E07044037
chr8141301637141301687E07044373
chr8141301695141301860E07044431
chr8141302036141302146E07044772
chr8141302254141302441E07044990
chr8141208508141208576E071-48688
chr8141208617141208667E071-48597
chr8141208668141208755E071-48509
chr8141208807141209148E071-48116
chr8141223683141224241E071-33023
chr8141224261141224355E071-32909
chr8141224493141224586E071-32678
chr8141224684141225301E071-31963
chr8141247966141250394E071-6870
chr8141250486141250548E071-6716
chr8141272545141273112E07115281
chr8141273216141273364E07115952
chr8141273369141273453E07116105
chr8141299865141300177E07142601
chr8141300256141300363E07142992
chr8141300369141300478E07143105
chr8141300534141300584E07143270
chr8141300586141300766E07143322
chr8141301053141301163E07143789
chr8141301185141301248E07143921
chr8141301301141301517E07144037
chr8141301637141301687E07144373
chr8141301695141301860E07144431
chr8141305345141305427E07148081
chr8141305467141305517E07148203
chr8141305699141305864E07148435
chr8141305944141305984E07148680
chr8141306132141306192E07148868
chr8141306733141306783E07149469
chr8141306810141306919E07149546
chr8141208508141208576E072-48688
chr8141208617141208667E072-48597
chr8141208668141208755E072-48509
chr8141208807141209148E072-48116
chr8141209178141209576E072-47688
chr8141247966141250394E072-6870
chr8141250486141250548E072-6716
chr8141272370141272544E07215106
chr8141272545141273112E07215281
chr8141273216141273364E07215952
chr8141273369141273453E07216105
chr8141299004141299864E07241740
chr8141299865141300177E07242601
chr8141300256141300363E07242992
chr8141300369141300478E07243105
chr8141300534141300584E07243270
chr8141300586141300766E07243322
chr8141301053141301163E07243789
chr8141301185141301248E07243921
chr8141301301141301517E07244037
chr8141301637141301687E07244373
chr8141301695141301860E07244431
chr8141305345141305427E07248081
chr8141305467141305517E07248203
chr8141305699141305864E07248435
chr8141305944141305984E07248680
chr8141208807141209148E073-48116
chr8141209178141209576E073-47688
chr8141247966141250394E073-6870
chr8141250486141250548E073-6716
chr8141299865141300177E07342601
chr8141300256141300363E07342992
chr8141300369141300478E07343105
chr8141301053141301163E07343789
chr8141301185141301248E07343921
chr8141301301141301517E07344037
chr8141301637141301687E07344373
chr8141305345141305427E07348081
chr8141305467141305517E07348203
chr8141305699141305864E07348435
chr8141208807141209148E074-48116
chr8141209178141209576E074-47688
chr8141224684141225301E074-31963
chr8141247966141250394E074-6870
chr8141250486141250548E074-6716
chr8141273216141273364E07415952
chr8141273369141273453E07416105
chr8141299865141300177E07442601
chr8141300256141300363E07442992
chr8141300369141300478E07443105
chr8141300534141300584E07443270
chr8141300586141300766E07443322
chr8141301053141301163E07443789
chr8141301185141301248E07443921
chr8141301301141301517E07444037
chr8141301637141301687E07444373
chr8141301695141301860E07444431
chr8141302036141302146E07444772
chr8141302254141302441E07444990
chr8141207420141208181E081-49083
chr8141208508141208576E081-48688
chr8141208617141208667E081-48597
chr8141208668141208755E081-48509
chr8141208807141209148E081-48116
chr8141209178141209576E081-47688
chr8141219893141220666E081-36598
chr8141220789141220961E081-36303
chr8141223683141224241E081-33023
chr8141224261141224355E081-32909
chr8141224493141224586E081-32678
chr8141224684141225301E081-31963
chr8141225387141225439E081-31825
chr8141226034141226084E081-31180
chr8141237925141238059E081-19205
chr8141238140141239030E081-18234
chr8141242610141242798E081-14466
chr8141242807141242857E081-14407
chr8141242961141243139E081-14125
chr8141247966141250394E081-6870
chr8141250486141250548E081-6716
chr8141271223141271276E08113959
chr8141271353141271393E08114089
chr8141271417141271467E08114153
chr8141271650141271701E08114386
chr8141271903141272019E08114639
chr8141272151141272248E08114887
chr8141272297141272354E08115033
chr8141272370141272544E08115106
chr8141272545141273112E08115281
chr8141273216141273364E08115952
chr8141273369141273453E08116105
chr8141273735141273837E08116471
chr8141273945141274022E08116681
chr8141274692141274820E08117428
chr8141274888141275518E08117624
chr8141278243141278299E08120979
chr8141278359141278574E08121095
chr8141278680141278730E08121416
chr8141278765141278863E08121501
chr8141284051141284203E08126787
chr8141295875141296207E08138611
chr8141296215141296603E08138951
chr8141296686141296755E08139422
chr8141296979141297064E08139715
chr8141297338141297388E08140074
chr8141297422141297534E08140158
chr8141298753141298803E08141489
chr8141299004141299864E08141740
chr8141299865141300177E08142601
chr8141300256141300363E08142992
chr8141300369141300478E08143105
chr8141300534141300584E08143270
chr8141300586141300766E08143322
chr8141301053141301163E08143789
chr8141301185141301248E08143921
chr8141301301141301517E08144037
chr8141301637141301687E08144373
chr8141301695141301860E08144431
chr8141302036141302146E08144772
chr8141207420141208181E082-49083
chr8141208807141209148E082-48116
chr8141209178141209576E082-47688
chr8141223683141224241E082-33023
chr8141224261141224355E082-32909
chr8141224493141224586E082-32678
chr8141224684141225301E082-31963
chr8141225387141225439E082-31825
chr8141238140141239030E082-18234
chr8141242610141242798E082-14466
chr8141242807141242857E082-14407
chr8141242961141243139E082-14125
chr8141247966141250394E082-6870
chr8141250486141250548E082-6716
chr8141271903141272019E08214639
chr8141272151141272248E08214887
chr8141272297141272354E08215033
chr8141272370141272544E08215106
chr8141272545141273112E08215281
chr8141273216141273364E08215952
chr8141273369141273453E08216105
chr8141297422141297534E08240158
chr8141297867141297972E08240603
chr8141298486141298604E08241222
chr8141298669141298719E08241405
chr8141298753141298803E08241489
chr8141299004141299864E08241740
chr8141299865141300177E08242601
chr8141300256141300363E08242992
chr8141300369141300478E08243105
chr8141300534141300584E08243270
chr8141300586141300766E08243322
chr8141301053141301163E08243789
chr8141301185141301248E08243921
chr8141301301141301517E08244037
chr8141301637141301687E08244373
chr8141301695141301860E08244431
chr8141302036141302146E08244772