SNP Detail Info-rs702167

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G==0312 (9328/29894,GnomAD)
G==0293 (8552/29118,TOPMED)
G==0271 (1355/5008,1000G)
G==0386 (1486/3854,ALSPAC)
G==0387 (1436/3708,TWINSUK)

Position: chr9:1605827 (GRCh38.p7) (9p24.3)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 4 Enhancers around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 9	NC_000009.12:g.1605827G>A
GRCh37.p13 chr 9	NC_000009.11:g.1605827G>A

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.200	A=0.800
1000Genomes	American	Sub	694	G=0.260	A=0.740
1000Genomes	East Asian	Sub	1008	G=0.151	A=0.849
1000Genomes	Europe	Sub	1006	G=0.370	A=0.630
1000Genomes	Global	Study-wide	5008	G=0.271	A=0.729
1000Genomes	South Asian	Sub	978	G=0.400	A=0.600
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.386	A=0.614
The Genome Aggregation Database	African	Sub	8708	G=0.230	A=0.770
The Genome Aggregation Database	American	Sub	834	G=0.240	A=0.760
The Genome Aggregation Database	East Asian	Sub	1614	G=0.191	A=0.809
The Genome Aggregation Database	Europe	Sub	18436	G=0.363	A=0.637
The Genome Aggregation Database	Global	Study-wide	29894	G=0.312	A=0.688
The Genome Aggregation Database	Other	Sub	302	G=0.390	A=0.610
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.293	A=0.706
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.387	A=0.613

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs702167	0.0003	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr9	1619971	1620277	E067	14144
chr9	1620347	1620422	E067	14520
chr9	1629987	1630051	E074	24160
chr9	1630118	1630178	E074	24291

rs702167