rs7032966

Homo sapiens
C>T
LOC105376072 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
C==0201 (6019/29934,GnomAD)
C==0219 (6381/29118,TOPMED)
C==0217 (1088/5008,1000G)
C==0179 (688/3854,ALSPAC)
C==0169 (628/3708,TWINSUK)
chr9:68596686 (GRCh38.p7) (9q21.11)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 9NC_000009.12:g.68596686C>T
GRCh37.p13 chr 9NC_000009.11:g.71211602C>T

Gene: LOC105376072, uncharacterized LOC105376072(plus strand)

Molecule type Change Amino acid[Codon] SO Term
LOC105376072 transcriptXR_001746701.1:n.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.350T=0.650
1000GenomesAmericanSub694C=0.130T=0.870
1000GenomesEast AsianSub1008C=0.231T=0.769
1000GenomesEuropeSub1006C=0.167T=0.833
1000GenomesGlobalStudy-wide5008C=0.217T=0.783
1000GenomesSouth AsianSub978C=0.140T=0.860
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.179T=0.821
The Genome Aggregation DatabaseAfricanSub8708C=0.302T=0.698
The Genome Aggregation DatabaseAmericanSub838C=0.120T=0.880
The Genome Aggregation DatabaseEast AsianSub1606C=0.288T=0.712
The Genome Aggregation DatabaseEuropeSub18480C=0.151T=0.848
The Genome Aggregation DatabaseGlobalStudy-wide29934C=0.201T=0.798
The Genome Aggregation DatabaseOtherSub302C=0.110T=0.890
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.219T=0.780
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.169T=0.831
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs70329660.000445alcohol dependence21314694

eQTL of rs7032966 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs7032966 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.