Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 12 | NC_000012.12:g.101280507G>C |
GRCh37.p13 chr 12 | NC_000012.11:g.101674285G>C |
Molecule type | Change | Amino acid[Codon] | SO Term |
---|---|---|---|
UTP20 transcript | NM_014503.2:c. | N/A | Intron Variant |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | G=0.043 | C=0.957 |
1000Genomes | American | Sub | 694 | G=0.220 | C=0.780 |
1000Genomes | East Asian | Sub | 1008 | G=0.343 | C=0.657 |
1000Genomes | Europe | Sub | 1006 | G=0.170 | C=0.830 |
1000Genomes | Global | Study-wide | 5008 | G=0.162 | C=0.838 |
1000Genomes | South Asian | Sub | 978 | G=0.080 | C=0.920 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | G=0.167 | C=0.833 |
The Genome Aggregation Database | African | Sub | 8722 | G=0.063 | C=0.937 |
The Genome Aggregation Database | American | Sub | 838 | G=0.240 | C=0.760 |
The Genome Aggregation Database | East Asian | Sub | 1614 | G=0.328 | C=0.672 |
The Genome Aggregation Database | Europe | Sub | 18486 | G=0.164 | C=0.835 |
The Genome Aggregation Database | Global | Study-wide | 29962 | G=0.146 | C=0.853 |
The Genome Aggregation Database | Other | Sub | 302 | G=0.200 | C=0.800 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | G=0.138 | C=0.861 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | G=0.169 | C=0.831 |
PMID | Title | Author | Journal |
---|---|---|---|
24962325 | Genome-wide survival analysis of age at onset of alcohol dependence in extended high-risk COGA families. | Kapoor M | Drug Alcohol Depend |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs703711 | 8.41E-06 | alcohol dependence (age at onset) | 24962325 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr12 | 101691390 | 101691641 | E067 | 17105 |
chr12 | 101692002 | 101692211 | E067 | 17717 |
chr12 | 101692243 | 101692491 | E067 | 17958 |
chr12 | 101692002 | 101692211 | E069 | 17717 |
chr12 | 101692243 | 101692491 | E069 | 17958 |
chr12 | 101684127 | 101684167 | E071 | 9842 |
chr12 | 101691390 | 101691641 | E071 | 17105 |
chr12 | 101691390 | 101691641 | E072 | 17105 |
chr12 | 101692002 | 101692211 | E072 | 17717 |
chr12 | 101632145 | 101633097 | E081 | -41188 |
chr12 | 101633155 | 101633205 | E081 | -41080 |
chr12 | 101632145 | 101633097 | E082 | -41188 |
chr12 | 101633155 | 101633205 | E082 | -41080 |
Chromosome | Start | End | Region | Distance(-/+:Up/Downstream) |
---|---|---|---|---|
chr12 | 101673164 | 101673326 | E067 | -959 |
chr12 | 101673369 | 101673461 | E067 | -824 |
chr12 | 101673570 | 101674315 | E067 | 0 |
chr12 | 101674460 | 101674520 | E067 | 175 |
chr12 | 101674561 | 101674663 | E067 | 276 |
chr12 | 101692853 | 101693016 | E067 | 18568 |
chr12 | 101693076 | 101693399 | E067 | 18791 |
chr12 | 101693724 | 101694082 | E067 | 19439 |
chr12 | 101673164 | 101673326 | E068 | -959 |
chr12 | 101673369 | 101673461 | E068 | -824 |
chr12 | 101673570 | 101674315 | E068 | 0 |
chr12 | 101674460 | 101674520 | E068 | 175 |
chr12 | 101674561 | 101674663 | E068 | 276 |
chr12 | 101692853 | 101693016 | E068 | 18568 |
chr12 | 101693076 | 101693399 | E068 | 18791 |
chr12 | 101673164 | 101673326 | E069 | -959 |
chr12 | 101673369 | 101673461 | E069 | -824 |
chr12 | 101673570 | 101674315 | E069 | 0 |
chr12 | 101674460 | 101674520 | E069 | 175 |
chr12 | 101674561 | 101674663 | E069 | 276 |
chr12 | 101692853 | 101693016 | E069 | 18568 |
chr12 | 101693076 | 101693399 | E069 | 18791 |
chr12 | 101693724 | 101694082 | E069 | 19439 |
chr12 | 101673164 | 101673326 | E070 | -959 |
chr12 | 101673369 | 101673461 | E070 | -824 |
chr12 | 101673570 | 101674315 | E070 | 0 |
chr12 | 101674460 | 101674520 | E070 | 175 |
chr12 | 101674561 | 101674663 | E070 | 276 |
chr12 | 101673056 | 101673115 | E071 | -1170 |
chr12 | 101673121 | 101673150 | E071 | -1135 |
chr12 | 101673164 | 101673326 | E071 | -959 |
chr12 | 101673369 | 101673461 | E071 | -824 |
chr12 | 101673570 | 101674315 | E071 | 0 |
chr12 | 101674460 | 101674520 | E071 | 175 |
chr12 | 101674561 | 101674663 | E071 | 276 |
chr12 | 101692853 | 101693016 | E071 | 18568 |
chr12 | 101693076 | 101693399 | E071 | 18791 |
chr12 | 101693724 | 101694082 | E071 | 19439 |
chr12 | 101673164 | 101673326 | E072 | -959 |
chr12 | 101673369 | 101673461 | E072 | -824 |
chr12 | 101673570 | 101674315 | E072 | 0 |
chr12 | 101674460 | 101674520 | E072 | 175 |
chr12 | 101674561 | 101674663 | E072 | 276 |
chr12 | 101692853 | 101693016 | E072 | 18568 |
chr12 | 101693076 | 101693399 | E072 | 18791 |
chr12 | 101673164 | 101673326 | E073 | -959 |
chr12 | 101673369 | 101673461 | E073 | -824 |
chr12 | 101673570 | 101674315 | E073 | 0 |
chr12 | 101674460 | 101674520 | E073 | 175 |
chr12 | 101674561 | 101674663 | E073 | 276 |
chr12 | 101673164 | 101673326 | E074 | -959 |
chr12 | 101673369 | 101673461 | E074 | -824 |
chr12 | 101673570 | 101674315 | E074 | 0 |
chr12 | 101674460 | 101674520 | E074 | 175 |
chr12 | 101674561 | 101674663 | E074 | 276 |
chr12 | 101692853 | 101693016 | E074 | 18568 |
chr12 | 101693076 | 101693399 | E074 | 18791 |
chr12 | 101693724 | 101694082 | E074 | 19439 |
chr12 | 101673369 | 101673461 | E081 | -824 |
chr12 | 101673570 | 101674315 | E081 | 0 |
chr12 | 101674460 | 101674520 | E081 | 175 |
chr12 | 101674561 | 101674663 | E081 | 276 |
chr12 | 101673056 | 101673115 | E082 | -1170 |
chr12 | 101673121 | 101673150 | E082 | -1135 |
chr12 | 101673164 | 101673326 | E082 | -959 |
chr12 | 101673369 | 101673461 | E082 | -824 |
chr12 | 101673570 | 101674315 | E082 | 0 |
chr12 | 101674460 | 101674520 | E082 | 175 |
chr12 | 101674561 | 101674663 | E082 | 276 |