Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 9 | NC_000009.12:g.76616633C>T |
GRCh37.p13 chr 9 | NC_000009.11:g.79231549C>T |
Molecule type | Change | Amino acid[Codon] | SO Term |
---|---|---|---|
PRUNE2 transcript variant 2 | NM_001308047.1:c. | N/A | Intron Variant |
PRUNE2 transcript variant 3 | NM_001308048.1:c. | N/A | Intron Variant |
PRUNE2 transcript variant 4 | NM_001308049.1:c. | N/A | Intron Variant |
PRUNE2 transcript variant 5 | NM_001308050.1:c. | N/A | Intron Variant |
PRUNE2 transcript variant 6 | NM_001308051.1:c. | N/A | Intron Variant |
PRUNE2 transcript variant 1 | NM_015225.2:c. | N/A | Intron Variant |
PRUNE2 transcript variant 7 | NR_131751.1:n. | N/A | Intron Variant |
PRUNE2 transcript variant X7 | XM_005251745.1:c. | N/A | Intron Variant |
PRUNE2 transcript variant X8 | XM_005251746.1:c. | N/A | Intron Variant |
PRUNE2 transcript variant X10 | XM_005251748.1:c. | N/A | Intron Variant |
PRUNE2 transcript variant X13 | XM_005251750.1:c. | N/A | Intron Variant |
PRUNE2 transcript variant X20 | XM_005251751.1:c. | N/A | Intron Variant |
PRUNE2 transcript variant X28 | XM_005251754.1:c. | N/A | Intron Variant |
PRUNE2 transcript variant X1 | XM_006716982.1:c. | N/A | Intron Variant |
PRUNE2 transcript variant X2 | XM_006716983.1:c. | N/A | Intron Variant |
PRUNE2 transcript variant X4 | XM_006716984.2:c. | N/A | Intron Variant |
PRUNE2 transcript variant X5 | XM_006716985.1:c. | N/A | Intron Variant |
PRUNE2 transcript variant X6 | XM_006716986.1:c. | N/A | Intron Variant |
PRUNE2 transcript variant X11 | XM_011518323.1:c. | N/A | Intron Variant |
PRUNE2 transcript variant X16 | XM_011518326.2:c. | N/A | Intron Variant |
PRUNE2 transcript variant X17 | XM_011518327.1:c. | N/A | Intron Variant |
PRUNE2 transcript variant X24 | XM_011518328.2:c. | N/A | Intron Variant |
PRUNE2 transcript variant X9 | XM_017014345.1:c. | N/A | Intron Variant |
PRUNE2 transcript variant X14 | XM_017014346.1:c. | N/A | Intron Variant |
PRUNE2 transcript variant X18 | XM_017014347.1:c. | N/A | Intron Variant |
PRUNE2 transcript variant X19 | XM_017014348.1:c. | N/A | Intron Variant |
PRUNE2 transcript variant X21 | XM_017014349.1:c. | N/A | Intron Variant |
PRUNE2 transcript variant X22 | XM_017014350.1:c. | N/A | Intron Variant |
PRUNE2 transcript variant X25 | XM_017014351.1:c. | N/A | Intron Variant |
PRUNE2 transcript variant X26 | XM_017014352.1:c. | N/A | Intron Variant |
PRUNE2 transcript variant X29 | XM_017014354.1:c. | N/A | Intron Variant |
PRUNE2 transcript variant X30 | XM_017014355.1:c. | N/A | Intron Variant |
PRUNE2 transcript variant X31 | XM_017014356.1:c. | N/A | Intron Variant |
PRUNE2 transcript variant X32 | XM_017014357.1:c. | N/A | Intron Variant |
PRUNE2 transcript variant X33 | XM_017014358.1:c. | N/A | Intron Variant |
PRUNE2 transcript variant X34 | XM_017014359.1:c. | N/A | Intron Variant |
PRUNE2 transcript variant X27 | XM_017014353.1:c. | N/A | Genic Downstream Transcript Variant |
PRUNE2 transcript variant X12 | XR_001746209.1:n. | N/A | Intron Variant |
PRUNE2 transcript variant X15 | XR_001746210.1:n. | N/A | Intron Variant |
PRUNE2 transcript variant X23 | XR_001746211.1:n. | N/A | Intron Variant |
PRUNE2 transcript variant X35 | XR_001746212.1:n. | N/A | Intron Variant |
PRUNE2 transcript variant X3 | XR_428517.2:n. | N/A | Intron Variant |
Molecule type | Change | Amino acid[Codon] | SO Term |
---|---|---|---|
LOC105376095 transcript variant X1 | XR_001746738.1:n. | N/A | Intron Variant |
LOC105376095 transcript variant X2 | XR_001746739.1:n. | N/A | Intron Variant |
LOC105376095 transcript variant X3 | XR_001746740.1:n. | N/A | Intron Variant |
LOC105376095 transcript variant X4 | XR_001746741.1:n. | N/A | Intron Variant |
LOC105376095 transcript variant X5 | XR_001746742.1:n. | N/A | Intron Variant |
LOC105376095 transcript variant X6 | XR_001746743.1:n. | N/A | Intron Variant |
LOC105376095 transcript variant X7 | XR_001746744.1:n. | N/A | Intron Variant |
LOC105376095 transcript variant X8 | XR_001746745.1:n. | N/A | Intron Variant |
LOC105376095 transcript variant X9 | XR_001746746.1:n. | N/A | Intron Variant |
LOC105376095 transcript variant X10 | XR_001746747.1:n. | N/A | Intron Variant |
LOC105376095 transcript variant X11 | XR_001746748.1:n. | N/A | Intron Variant |
LOC105376095 transcript variant X12 | XR_001746749.1:n. | N/A | Intron Variant |
LOC105376095 transcript variant X13 | XR_001746750.1:n. | N/A | Intron Variant |
LOC105376095 transcript variant X14 | XR_001746751.1:n. | N/A | Intron Variant |
LOC105376095 transcript variant X7 | XR_001746752.1:n. | N/A | Intron Variant |
LOC105376095 transcript variant X12 | XR_001746753.1:n. | N/A | Intron Variant |
LOC105376095 transcript variant X13 | XR_001746754.1:n. | N/A | Intron Variant |
LOC105376095 transcript variant X18 | XR_001746755.1:n. | N/A | Intron Variant |
LOC105376095 transcript variant X19 | XR_001746756.1:n. | N/A | Intron Variant |
LOC105376095 transcript variant X21 | XR_001746757.1:n. | N/A | Intron Variant |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | C=0.049 | T=0.951 |
1000Genomes | American | Sub | 694 | C=0.040 | T=0.960 |
1000Genomes | East Asian | Sub | 1008 | C=0.093 | T=0.907 |
1000Genomes | Europe | Sub | 1006 | C=0.048 | T=0.952 |
1000Genomes | Global | Study-wide | 5008 | C=0.085 | T=0.915 |
1000Genomes | South Asian | Sub | 978 | C=0.200 | T=0.800 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | C=0.052 | T=0.948 |
The Genome Aggregation Database | African | Sub | 8728 | C=0.047 | T=0.953 |
The Genome Aggregation Database | American | Sub | 838 | C=0.040 | T=0.960 |
The Genome Aggregation Database | East Asian | Sub | 1616 | C=0.072 | T=0.928 |
The Genome Aggregation Database | Europe | Sub | 18504 | C=0.049 | T=0.950 |
The Genome Aggregation Database | Global | Study-wide | 29988 | C=0.050 | T=0.949 |
The Genome Aggregation Database | Other | Sub | 302 | C=0.120 | T=0.880 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | C=0.050 | T=0.949 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | C=0.047 | T=0.953 |
PMID | Title | Author | Journal |
---|---|---|---|
17158188 | Novel genes identified in a high-density genome wide association study for nicotine dependence. | Bierut LJ | Hum Mol Genet |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs7046144 | 0.000465 | nicotine dependence | 17158188 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr9 | 79261133 | 79261536 | E067 | 29584 |
chr9 | 79269501 | 79269907 | E067 | 37952 |
chr9 | 79269956 | 79270580 | E067 | 38407 |
chr9 | 79223557 | 79225373 | E068 | -6176 |
chr9 | 79253009 | 79253308 | E068 | 21460 |
chr9 | 79257518 | 79257780 | E068 | 25969 |
chr9 | 79257796 | 79257847 | E068 | 26247 |
chr9 | 79257857 | 79258024 | E068 | 26308 |
chr9 | 79258038 | 79258166 | E068 | 26489 |
chr9 | 79258346 | 79258954 | E068 | 26797 |
chr9 | 79258968 | 79259094 | E068 | 27419 |
chr9 | 79265600 | 79266749 | E068 | 34051 |
chr9 | 79239025 | 79239173 | E069 | 7476 |
chr9 | 79269956 | 79270580 | E069 | 38407 |
chr9 | 79206807 | 79206988 | E070 | -24561 |
chr9 | 79207012 | 79208261 | E070 | -23288 |
chr9 | 79215047 | 79215126 | E070 | -16423 |
chr9 | 79217887 | 79217937 | E070 | -13612 |
chr9 | 79218344 | 79218818 | E070 | -12731 |
chr9 | 79218863 | 79219159 | E070 | -12390 |
chr9 | 79223557 | 79225373 | E071 | -6176 |
chr9 | 79253009 | 79253308 | E071 | 21460 |
chr9 | 79261133 | 79261536 | E071 | 29584 |
chr9 | 79269956 | 79270580 | E071 | 38407 |
chr9 | 79274091 | 79274141 | E071 | 42542 |
chr9 | 79253009 | 79253308 | E072 | 21460 |
chr9 | 79261133 | 79261536 | E072 | 29584 |
chr9 | 79269046 | 79269206 | E072 | 37497 |
chr9 | 79261133 | 79261536 | E073 | 29584 |
chr9 | 79223557 | 79225373 | E074 | -6176 |
chr9 | 79253009 | 79253308 | E074 | 21460 |
chr9 | 79257857 | 79258024 | E074 | 26308 |
chr9 | 79258038 | 79258166 | E074 | 26489 |
chr9 | 79269215 | 79269479 | E074 | 37666 |
chr9 | 79269501 | 79269907 | E074 | 37952 |
chr9 | 79200531 | 79202194 | E081 | -29355 |
chr9 | 79202399 | 79202449 | E081 | -29100 |
chr9 | 79202732 | 79202786 | E081 | -28763 |
chr9 | 79211188 | 79211303 | E081 | -20246 |
chr9 | 79211317 | 79211673 | E081 | -19876 |
chr9 | 79217221 | 79217425 | E081 | -14124 |
chr9 | 79217887 | 79217937 | E081 | -13612 |
chr9 | 79218344 | 79218818 | E081 | -12731 |
chr9 | 79218863 | 79219159 | E081 | -12390 |
chr9 | 79235440 | 79235563 | E081 | 3891 |
chr9 | 79235579 | 79235849 | E081 | 4030 |
chr9 | 79235922 | 79236207 | E081 | 4373 |
chr9 | 79236294 | 79236344 | E081 | 4745 |
chr9 | 79238491 | 79238677 | E081 | 6942 |
chr9 | 79238678 | 79238901 | E081 | 7129 |
chr9 | 79239025 | 79239173 | E081 | 7476 |
chr9 | 79239275 | 79239979 | E081 | 7726 |
chr9 | 79218863 | 79219159 | E082 | -12390 |
chr9 | 79235440 | 79235563 | E082 | 3891 |
chr9 | 79235579 | 79235849 | E082 | 4030 |
chr9 | 79235922 | 79236207 | E082 | 4373 |
chr9 | 79236294 | 79236344 | E082 | 4745 |
chr9 | 79238678 | 79238901 | E082 | 7129 |
chr9 | 79239025 | 79239173 | E082 | 7476 |
chr9 | 79239275 | 79239979 | E082 | 7726 |