SNP Detail Info-rs7060195

Organism: Homo sapiens

Alleles: T>G

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G=0078 (1631/20776,GnomAD)
G=0106 (400/3775,1000G)
G=0060 (223/3708,TWINSUK)
G=0063 (183/2889,ALSPAC)

Position: chrX:93398386 (GRCh38.p7) (Xq21.32)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr X	NC_000023.11:g.93398386T>G
GRCh37.p13 chr X	NC_000023.10:g.92653385T>G

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1003	T=0.821	G=0.179
1000Genomes	American	Sub	524	T=0.960	G=0.040
1000Genomes	East Asian	Sub	764	T=0.930	G=0.070
1000Genomes	Europe	Sub	766	T=0.950	G=0.050
1000Genomes	Global	Study-wide	3775	T=0.894	G=0.106
1000Genomes	South Asian	Sub	718	T=0.850	G=0.150
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	2889	T=0.937	G=0.063
The Genome Aggregation Database	African	Sub	5876	T=0.839	G=0.161
The Genome Aggregation Database	American	Sub	588	T=0.970	G=0.030
The Genome Aggregation Database	East Asian	Sub	1027	T=0.932	G=0.068
The Genome Aggregation Database	Europe	Sub	13096	T=0.955	G=0.044
The Genome Aggregation Database	Global	Study-wide	20776	T=0.921	G=0.078
The Genome Aggregation Database	Other	Sub	189	T=0.920	G=0.080
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	T=0.940	G=0.060

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs7060195	0.000842	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs7060195