rs7076979

Homo sapiens
G>A / G>T
None
Check p-value
SNV (Single Nucleotide Variation)
T=0250 (7493/29936,GnomAD)
T=0278 (8122/29118,TOPMED)
T=0219 (1098/5008,1000G)
T=0252 (972/3854,ALSPAC)
T=0247 (915/3708,TWINSUK)
chr10:84043209 (GRCh38.p7) (10q23.1)
AD
GWASdb2
1   publication(s)
See rs on genome

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 10NC_000010.11:g.84043209G>A
GRCh38.p7 chr 10NC_000010.11:g.84043209G>T
GRCh37.p13 chr 10NC_000010.10:g.85802965G>A
GRCh37.p13 chr 10NC_000010.10:g.85802965G>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.641T=0.359
1000GenomesAmericanSub694G=0.790T=0.210
1000GenomesEast AsianSub1008G=0.980T=0.020
1000GenomesEuropeSub1006G=0.772T=0.228
1000GenomesGlobalStudy-wide5008G=0.781T=0.219
1000GenomesSouth AsianSub978G=0.770T=0.230
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.748T=0.252
The Genome Aggregation DatabaseAfricanSub8710G=0.659A=0.000
The Genome Aggregation DatabaseAmericanSub838G=0.790A=0.00,
The Genome Aggregation DatabaseEast AsianSub1620G=0.993A=0.000
The Genome Aggregation DatabaseEuropeSub18466G=0.771A=0.000
The Genome Aggregation DatabaseGlobalStudy-wide29936G=0.749A=0.000
The Genome Aggregation DatabaseOtherSub302G=0.590A=0.00,
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.721T=0.278
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.753T=0.247
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs70769790.00015alcohol dependence(early age of onset)20201924
rs70769790.00074alcohol dependence20201924

eQTL of rs7076979 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs7076979 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr106094319860943339E067-47167
chr106094339260943665E067-46841
chr106094389160944043E067-46463
chr106095514360955401E067-35105
chr106097225260972346E067-18160
chr106097604960976089E067-14417
chr106097619360976243E067-14263
chr106098154460981584E067-8922
chr106098956760989633E067-873
chr106099052860990596E06722
chr106099118960991239E067683
chr106099126160991341E067755
chr106100001461000081E0679508
chr106100036761000721E0679861
chr106100093861001151E06710432
chr106100150161001546E06710995
chr106100161061001677E06711104
chr106100172061001774E06711214
chr106100183461001889E06711328
chr106100189861001948E06711392
chr106100479161004899E06714285
chr106100529761005880E06714791
chr106100739661007957E06716890
chr106100826761008324E06717761
chr106101272161012916E06722215
chr106101303961013091E06722533
chr106101408261014136E06723576
chr106102137661021420E06730870
chr106102199561022045E06731489
chr106102229961022407E06731793
chr106102508961025222E06734583
chr106102524861025292E06734742
chr106102530161025351E06734795
chr106102555261025602E06735046
chr106102612361026553E06735617
chr106102846361028604E06737957
chr106102908061029130E06738574
chr106102919861030583E06738692
chr106103061461030932E06740108
chr106103113561031331E06740629
chr106103152161031575E06741015
chr106103162061031822E06741114
chr106103186261032258E06741356
chr106103233661032410E06741830
chr106103314061033313E06742634
chr106103336461033509E06742858
chr106103370661033799E06743200
chr106103425161034318E06743745
chr106103497361035044E06744467
chr106103683761036992E06746331
chr106103929561039381E06748789
chr106103946161039561E06748955
chr106103969461039734E06749188
chr106094319860943339E068-47167
chr106094339260943665E068-46841
chr106096557860965631E068-24875
chr106096569160965762E068-24744
chr106097958960979639E068-10867
chr106098154460981584E068-8922
chr106098264860982912E068-7594
chr106098720160987283E068-3223
chr106098732160987481E068-3025
chr106098930960989446E068-1060
chr106098956760989633E068-873
chr106099118960991239E068683
chr106099126160991341E068755
chr106100001461000081E0689508
chr106100036761000721E0689861
chr106100093861001151E06810432
chr106100150161001546E06810995
chr106100161061001677E06811104
chr106100172061001774E06811214
chr106100183461001889E06811328
chr106100189861001948E06811392
chr106100739661007957E06816890
chr106102199561022045E06831489
chr106102229961022407E06831793
chr106102284361022893E06832337
chr106102313561023205E06832629
chr106102347161023521E06832965
chr106102353161023596E06833025
chr106102389561023950E06833389
chr106102612361026553E06835617
chr106103061461030932E06840108
chr106103113561031331E06840629
chr106103152161031575E06841015
chr106103162061031822E06841114
chr106103186261032258E06841356
chr106103233661032410E06841830
chr106103314061033313E06842634
chr106103336461033509E06842858
chr106103370661033799E06843200
chr106103425161034318E06843745
chr106103683761036992E06846331
chr106103720461037271E06846698
chr106103803361038121E06847527
chr106103946161039561E06848955
chr106103969461039734E06849188
chr106094319860943339E069-47167
chr106094339260943665E069-46841
chr106094389160944043E069-46463
chr106095514360955401E069-35105
chr106097225260972346E069-18160
chr106097604960976089E069-14417
chr106097619360976243E069-14263
chr106097958960979639E069-10867
chr106098154460981584E069-8922
chr106098230460982354E069-8152
chr106098264860982912E069-7594
chr106099052860990596E06922
chr106099118960991239E069683
chr106099126160991341E069755
chr106099694160996991E0696435
chr106100001461000081E0699508
chr106100036761000721E0699861
chr106100150161001546E06910995
chr106100161061001677E06911104
chr106100172061001774E06911214
chr106100183461001889E06911328
chr106100189861001948E06911392
chr106100479161004899E06914285
chr106100529761005880E06914791
chr106102389561023950E06933389
chr106102490061024967E06934394
chr106102502661025087E06934520
chr106102508961025222E06934583
chr106102524861025292E06934742
chr106102530161025351E06934795
chr106102555261025602E06935046
chr106102612361026553E06935617
chr106102773261027806E06937226
chr106102837861028460E06937872
chr106102846361028604E06937957
chr106102919861030583E06938692
chr106103061461030932E06940108
chr106103113561031331E06940629
chr106103152161031575E06941015
chr106103162061031822E06941114
chr106103186261032258E06941356
chr106103233661032410E06941830
chr106103314061033313E06942634
chr106103336461033509E06942858
chr106103370661033799E06943200
chr106103425161034318E06943745
chr106103683761036992E06946331
chr106103803361038121E06947527
chr106103929561039381E06948789
chr106103946161039561E06948955
chr106103969461039734E06949188
chr106103061461030932E07040108
chr106103113561031331E07040629
chr106103152161031575E07041015
chr106103162061031822E07041114
chr106103186261032258E07041356
chr106103233661032410E07041830
chr106103314061033313E07042634
chr106103336461033509E07042858
chr106094319860943339E071-47167
chr106094339260943665E071-46841
chr106094389160944043E071-46463
chr106095514360955401E071-35105
chr106096557860965631E071-24875
chr106096569160965762E071-24744
chr106096596760966432E071-24074
chr106097157060971645E071-18861
chr106098154460981584E071-8922
chr106098230460982354E071-8152
chr106098264860982912E071-7594
chr106098521160985261E071-5245
chr106098618860986238E071-4268
chr106098720160987283E071-3223
chr106098732160987481E071-3025
chr106098857260988622E071-1884
chr106099694160996991E0716435
chr106100001461000081E0719508
chr106100036761000721E0719861
chr106100093861001151E07110432
chr106100150161001546E07110995
chr106100161061001677E07111104
chr106100172061001774E07111214
chr106100479161004899E07114285
chr106100529761005880E07114791
chr106100739661007957E07116890
chr106101551761015571E07125011
chr106101711861017214E07126612
chr106101731761017384E07126811
chr106102229961022407E07131793
chr106102284361022893E07132337
chr106102313561023205E07132629
chr106102347161023521E07132965
chr106102353161023596E07133025
chr106102555261025602E07135046
chr106102612361026553E07135617
chr106102837861028460E07137872
chr106102846361028604E07137957
chr106102908061029130E07138574
chr106102919861030583E07138692
chr106103061461030932E07140108
chr106103113561031331E07140629
chr106103152161031575E07141015
chr106103162061031822E07141114
chr106103186261032258E07141356
chr106103233661032410E07141830
chr106103314061033313E07142634
chr106103336461033509E07142858
chr106103370661033799E07143200
chr106103425161034318E07143745
chr106103497361035044E07144467
chr106103683761036992E07146331
chr106103720461037271E07146698
chr106103774861037938E07147242
chr106103803361038121E07147527
chr106103946161039561E07148955
chr106103969461039734E07149188
chr106094389160944043E072-46463
chr106095514360955401E072-35105
chr106097225260972346E072-18160
chr106097604960976089E072-14417
chr106097619360976243E072-14263
chr106097958960979639E072-10867
chr106098264860982912E072-7594
chr106098857260988622E072-1884
chr106100001461000081E0729508
chr106100036761000721E0729861
chr106100150161001546E07210995
chr106100161061001677E07211104
chr106100172061001774E07211214
chr106100183461001889E07211328
chr106100189861001948E07211392
chr106100529761005880E07214791
chr106100739661007957E07216890
chr106101711861017214E07226612
chr106102612361026553E07235617
chr106102773261027806E07237226
chr106102837861028460E07237872
chr106102846361028604E07237957
chr106102908061029130E07238574
chr106102919861030583E07238692
chr106103061461030932E07240108
chr106103113561031331E07240629
chr106103152161031575E07241015
chr106103162061031822E07241114
chr106103186261032258E07241356
chr106103233661032410E07241830
chr106103314061033313E07242634
chr106103336461033509E07242858
chr106103370661033799E07243200
chr106103425161034318E07243745
chr106103683761036992E07246331
chr106103774861037938E07247242
chr106103803361038121E07247527
chr106103929561039381E07248789
chr106103946161039561E07248955
chr106103969461039734E07249188
chr106094319860943339E073-47167
chr106094339260943665E073-46841
chr106094389160944043E073-46463
chr106095514360955401E073-35105
chr106096487860964930E073-25576
chr106096497060965139E073-25367
chr106096569160965762E073-24744
chr106099118960991239E073683
chr106099126160991341E073755
chr106100001461000081E0739508
chr106102919861030583E07338692
chr106103061461030932E07340108
chr106103113561031331E07340629
chr106103152161031575E07341015
chr106103162061031822E07341114
chr106103186261032258E07341356
chr106103233661032410E07341830
chr106103336461033509E07342858
chr106103370661033799E07343200
chr106103683761036992E07346331
chr106103969461039734E07349188
chr106094339260943665E074-46841
chr106094389160944043E074-46463
chr106097958960979639E074-10867
chr106098154460981584E074-8922
chr106098230460982354E074-8152
chr106098264860982912E074-7594
chr106098497360985053E074-5453
chr106098510060985176E074-5330
chr106098521160985261E074-5245
chr106098618860986238E074-4268
chr106099292160992971E0742415
chr106099349760993550E0742991
chr106099694160996991E0746435
chr106100001461000081E0749508
chr106100036761000721E0749861
chr106100093861001151E07410432
chr106100150161001546E07410995
chr106100161061001677E07411104
chr106100172061001774E07411214
chr106100183461001889E07411328
chr106100189861001948E07411392
chr106100339261003838E07412886
chr106100479161004899E07414285
chr106100739661007957E07416890
chr106101711861017214E07426612
chr106101731761017384E07426811
chr106102229961022407E07431793
chr106102347161023521E07432965
chr106102353161023596E07433025
chr106102389561023950E07433389
chr106102508961025222E07434583
chr106102524861025292E07434742
chr106102530161025351E07434795
chr106102555261025602E07435046
chr106102612361026553E07435617
chr106102660961026687E07436103
chr106102669961026942E07436193
chr106102707461027179E07436568
chr106102750361027553E07436997
chr106102773261027806E07437226
chr106102837861028460E07437872
chr106102846361028604E07437957
chr106102908061029130E07438574
chr106102919861030583E07438692
chr106103061461030932E07440108
chr106103113561031331E07440629
chr106103152161031575E07441015
chr106103162061031822E07441114
chr106103186261032258E07441356
chr106103233661032410E07441830
chr106103314061033313E07442634
chr106103336461033509E07442858
chr106103370661033799E07443200
chr106103425161034318E07443745
chr106103497361035044E07444467
chr106103683761036992E07446331
chr106103720461037271E07446698
chr106103774861037938E07447242
chr106103803361038121E07447527
chr106103929561039381E07448789
chr106103946161039561E07448955
chr106103969461039734E07449188
chr106103061461030932E08140108
chr106103113561031331E08140629
chr106103152161031575E08141015
chr106103162061031822E08141114
chr106103186261032258E08141356
chr106103233661032410E08141830
chr106100036761000721E0829861
chr106103162061031822E08241114
chr106103186261032258E08241356
chr106103233661032410E08241830










Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr106094062860940914E067-49592
chr106094098760941101E067-49405
chr106094120460941267E067-49239
chr106094141560941904E067-48602
chr106094062860940914E068-49592
chr106094098760941101E068-49405
chr106094120460941267E068-49239
chr106094141560941904E068-48602
chr106094120460941267E069-49239
chr106094062860940914E071-49592
chr106094098760941101E071-49405
chr106094120460941267E071-49239
chr106094141560941904E071-48602
chr106094062860940914E072-49592
chr106094098760941101E072-49405
chr106094120460941267E072-49239
chr106094141560941904E072-48602
chr106094062860940914E073-49592
chr106094098760941101E073-49405
chr106094120460941267E073-49239
chr106094141560941904E073-48602
chr106094062860940914E074-49592
chr106094098760941101E074-49405
chr106094120460941267E074-49239
chr106094141560941904E074-48602