SNP Detail Info-rs7079620

Variant Details Frequency Publications p-values eSNP meSNP

Genomic Coordinates

Sequence Name	Change(s)
GRCh38.p7 chr 10	NC_000010.11:g.29583020G>A
GRCh37.p13 chr 10	NC_000010.10:g.29871949G>A
SVIL RefSeqGene	NG_033998.1:g.157782C>T

Gene: SVIL, supervillin(minus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
SVIL transcript variant 3	NM_001323599.1:c.	N/A	Intron Variant
SVIL transcript variant 4	NM_001323600.1:c.	N/A	Intron Variant
SVIL transcript variant 1	NM_003174.3:c.	N/A	Intron Variant
SVIL transcript variant 2	NM_021738.2:c.	N/A	Intron Variant
SVIL transcript variant X8	XM_005252570.2:c.	N/A	Intron Variant
SVIL transcript variant X8	XM_005252571.3:c.	N/A	Intron Variant
SVIL transcript variant X11	XM_005252573.2:c.	N/A	Intron Variant
SVIL transcript variant X2	XM_011519630.2:c.	N/A	Intron Variant
SVIL transcript variant X4	XM_011519631.2:c.	N/A	Intron Variant
SVIL transcript variant X6	XM_011519632.2:c.	N/A	Intron Variant
SVIL transcript variant X7	XM_011519633.2:c.	N/A	Intron Variant
SVIL transcript variant X9	XM_011519634.1:c.	N/A	Intron Variant
SVIL transcript variant X12	XM_011519635.1:c.	N/A	Intron Variant
SVIL transcript variant X13	XM_011519636.2:c.	N/A	Intron Variant
SVIL transcript variant X17	XM_011519637.2:c.	N/A	Intron Variant
SVIL transcript variant X18	XM_011519638.2:c.	N/A	Intron Variant
SVIL transcript variant X1	XM_017016575.1:c.	N/A	Intron Variant
SVIL transcript variant X3	XM_017016576.1:c.	N/A	Intron Variant
SVIL transcript variant X5	XM_017016577.1:c.	N/A	Intron Variant
SVIL transcript variant X14	XM_017016578.1:c.	N/A	Intron Variant
SVIL transcript variant X15	XM_017016579.1:c.	N/A	Intron Variant
SVIL transcript variant X16	XM_017016580.1:c.	N/A	Intron Variant
SVIL transcript variant X19	XM_017016581.1:c.	N/A	Intron Variant
SVIL transcript variant X20	XM_017016582.1:c.	N/A	Intron Variant
SVIL transcript variant X21	XM_017016583.1:c.	N/A	Intron Variant

Population Frequency

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.526	A=0.474
1000Genomes	American	Sub	694	G=0.500	A=0.500
1000Genomes	East Asian	Sub	1008	G=0.476	A=0.524
1000Genomes	Europe	Sub	1006	G=0.626	A=0.374
1000Genomes	Global	Study-wide	5008	G=0.555	A=0.445
1000Genomes	South Asian	Sub	978	G=0.640	A=0.360
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.602	A=0.398
The Genome Aggregation Database	African	Sub	8698	G=0.542	A=0.458
The Genome Aggregation Database	American	Sub	836	G=0.470	A=0.530
The Genome Aggregation Database	East Asian	Sub	1614	G=0.501	A=0.499
The Genome Aggregation Database	Europe	Sub	18448	G=0.599	A=0.400
The Genome Aggregation Database	Global	Study-wide	29898	G=0.575	A=0.424
The Genome Aggregation Database	Other	Sub	302	G=0.730	A=0.270
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.554	A=0.445
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.607	A=0.393

PMID	Title	Author	Journal
21314694	Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.	Kendler KS	Alcohol Clin Exp Res

P-Value

SNP ID	p-value	Traits	Study
rs7079620	0.000986	alcohol dependence	21314694

eQTL of rs7079620 in Brain tissues (GTEx Analysis Release V7)

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

meQTL of rs7079620 in Fetal Brain

Probe ID	Position	Gene	beta	p-value
cg12329853	chr10:29834266	SVIL\|MIR604	-0.0378901665708018	6.4726e-9

Enhancer Annotation (GRCh37.p13)

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr10	29887438	29888528	E067	15489
chr10	29843982	29845738	E068	-26211
chr10	29887438	29888528	E068	15489
chr10	29825126	29825228	E069	-46721
chr10	29830460	29830759	E069	-41190
chr10	29887438	29888528	E069	15489
chr10	29830460	29830759	E070	-41190
chr10	29843982	29845738	E070	-26211
chr10	29876115	29876249	E070	4166
chr10	29876281	29876398	E070	4332
chr10	29876554	29876980	E070	4605
chr10	29877282	29877350	E070	5333
chr10	29891213	29891422	E070	19264
chr10	29892013	29892719	E070	20064
chr10	29892721	29892838	E070	20772
chr10	29892857	29892897	E070	20908
chr10	29892957	29893058	E070	21008
chr10	29823509	29825022	E071	-46927
chr10	29830460	29830759	E071	-41190
chr10	29830844	29831148	E071	-40801
chr10	29831296	29831464	E071	-40485
chr10	29831839	29832001	E071	-39948
chr10	29832070	29832168	E071	-39781
chr10	29879013	29880060	E071	7064
chr10	29887438	29888528	E071	15489
chr10	29830460	29830759	E072	-41190
chr10	29887438	29888528	E072	15489
chr10	29823509	29825022	E073	-46927
chr10	29887438	29888528	E073	15489
chr10	29823509	29825022	E074	-46927
chr10	29825126	29825228	E074	-46721
chr10	29843982	29845738	E074	-26211
chr10	29887438	29888528	E074	15489
chr10	29830460	29830759	E081	-41190
chr10	29830844	29831148	E081	-40801
chr10	29874227	29874894	E081	2278
chr10	29877395	29878699	E081	5446
chr10	29879013	29880060	E081	7064
chr10	29887438	29888528	E081	15489
chr10	29892013	29892719	E081	20064
chr10	29892721	29892838	E081	20772
chr10	29830460	29830759	E082	-41190
chr10	29887438	29888528	E082	15489
chr10	29892013	29892719	E082	20064
chr10	29904176	29904291	E082	32227
chr10	29904309	29904569	E082	32360
chr10	29904664	29904714	E082	32715
chr10	29904779	29904829	E082	32830

rs7079620

Genomic Coordinates

Gene: SVIL, supervillin(minus strand)

Population Frequency

P-Value

eQTL of rs7079620 in Brain tissues (GTEx Analysis Release V7)

meQTL of rs7079620 in Fetal Brain

Genomic View

Chromatin Interaction

Enhancer Annotation (GRCh37.p13)