Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 10 | NC_000010.11:g.119265585A>C |
GRCh37.p13 chr 10 | NC_000010.10:g.121025097A>C |
Molecule type | Change | Amino acid[Codon] | SO Term |
---|---|---|---|
GRK5 transcript | NM_005308.2:c. | N/A | Intron Variant |
GRK5 transcript variant X1 | XM_005269707.1:c. | N/A | Intron Variant |
GRK5 transcript variant X2 | XM_005269708.1:c. | N/A | Intron Variant |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | A=0.577 | C=0.423 |
1000Genomes | American | Sub | 694 | A=0.540 | C=0.460 |
1000Genomes | East Asian | Sub | 1008 | A=0.765 | C=0.235 |
1000Genomes | Europe | Sub | 1006 | A=0.643 | C=0.357 |
1000Genomes | Global | Study-wide | 5008 | A=0.639 | C=0.361 |
1000Genomes | South Asian | Sub | 978 | A=0.660 | C=0.340 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | A=0.639 | C=0.361 |
The Genome Aggregation Database | African | Sub | 8698 | A=0.586 | C=0.414 |
The Genome Aggregation Database | American | Sub | 838 | A=0.530 | C=0.470 |
The Genome Aggregation Database | East Asian | Sub | 1612 | A=0.774 | C=0.226 |
The Genome Aggregation Database | Europe | Sub | 18458 | A=0.653 | C=0.346 |
The Genome Aggregation Database | Global | Study-wide | 29908 | A=0.635 | C=0.364 |
The Genome Aggregation Database | Other | Sub | 302 | A=0.520 | C=0.480 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | A=0.614 | C=0.385 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | A=0.618 | C=0.382 |
PMID | Title | Author | Journal |
---|---|---|---|
24277619 | ALDH2 is associated to alcohol dependence and is the major genetic determinant of "daily maximum drinks" in a GWAS study of an isolated rural Chinese sample. | Quillen EE | Am J Med Genet B Neuropsychiatr Genet |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs7095989 | 0.000647 | alcohol consumption (maxi-drinks) | 24277619 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr10 | 120994708 | 120995218 | E067 | -29879 |
chr10 | 121029639 | 121030016 | E067 | 4542 |
chr10 | 121030046 | 121031807 | E067 | 4949 |
chr10 | 121040871 | 121041823 | E067 | 15774 |
chr10 | 121041864 | 121041998 | E067 | 16767 |
chr10 | 121047911 | 121048010 | E067 | 22814 |
chr10 | 121049882 | 121050183 | E067 | 24785 |
chr10 | 121050200 | 121050663 | E067 | 25103 |
chr10 | 121012037 | 121012597 | E068 | -12500 |
chr10 | 121012609 | 121014286 | E068 | -10811 |
chr10 | 121040871 | 121041823 | E068 | 15774 |
chr10 | 121041864 | 121041998 | E068 | 16767 |
chr10 | 121042083 | 121042133 | E068 | 16986 |
chr10 | 121042141 | 121042287 | E068 | 17044 |
chr10 | 121047911 | 121048010 | E068 | 22814 |
chr10 | 121048078 | 121048609 | E068 | 22981 |
chr10 | 121048759 | 121049607 | E068 | 23662 |
chr10 | 121050671 | 121050985 | E068 | 25574 |
chr10 | 121053809 | 121053903 | E068 | 28712 |
chr10 | 121073900 | 121074005 | E068 | 48803 |
chr10 | 121074040 | 121074225 | E068 | 48943 |
chr10 | 121074228 | 121074303 | E068 | 49131 |
chr10 | 121074329 | 121074451 | E068 | 49232 |
chr10 | 120994708 | 120995218 | E069 | -29879 |
chr10 | 121027792 | 121029092 | E069 | 2695 |
chr10 | 121040871 | 121041823 | E069 | 15774 |
chr10 | 121041864 | 121041998 | E069 | 16767 |
chr10 | 121042083 | 121042133 | E069 | 16986 |
chr10 | 121042141 | 121042287 | E069 | 17044 |
chr10 | 121047911 | 121048010 | E069 | 22814 |
chr10 | 121048078 | 121048609 | E069 | 22981 |
chr10 | 120996411 | 120998472 | E070 | -26625 |
chr10 | 121017309 | 121017928 | E070 | -7169 |
chr10 | 121017956 | 121018356 | E070 | -6741 |
chr10 | 121040477 | 121040835 | E070 | 15380 |
chr10 | 121040871 | 121041823 | E070 | 15774 |
chr10 | 121009955 | 121011472 | E071 | -13625 |
chr10 | 121011489 | 121011891 | E071 | -13206 |
chr10 | 121011906 | 121011970 | E071 | -13127 |
chr10 | 121030046 | 121031807 | E071 | 4949 |
chr10 | 121040477 | 121040835 | E071 | 15380 |
chr10 | 121041864 | 121041998 | E071 | 16767 |
chr10 | 121042083 | 121042133 | E071 | 16986 |
chr10 | 121042141 | 121042287 | E071 | 17044 |
chr10 | 121044788 | 121044912 | E071 | 19691 |
chr10 | 121048078 | 121048609 | E071 | 22981 |
chr10 | 121048759 | 121049607 | E071 | 23662 |
chr10 | 121049729 | 121049857 | E071 | 24632 |
chr10 | 121049882 | 121050183 | E071 | 24785 |
chr10 | 121050200 | 121050663 | E071 | 25103 |
chr10 | 121074040 | 121074225 | E071 | 48943 |
chr10 | 121074228 | 121074303 | E071 | 49131 |
chr10 | 121074329 | 121074451 | E071 | 49232 |
chr10 | 121024301 | 121024426 | E072 | -671 |
chr10 | 121040477 | 121040835 | E072 | 15380 |
chr10 | 121041864 | 121041998 | E072 | 16767 |
chr10 | 121042083 | 121042133 | E072 | 16986 |
chr10 | 121042141 | 121042287 | E072 | 17044 |
chr10 | 121047911 | 121048010 | E072 | 22814 |
chr10 | 121048078 | 121048609 | E072 | 22981 |
chr10 | 120994565 | 120994617 | E073 | -30480 |
chr10 | 120994708 | 120995218 | E073 | -29879 |
chr10 | 121009955 | 121011472 | E073 | -13625 |
chr10 | 121011489 | 121011891 | E073 | -13206 |
chr10 | 121011906 | 121011970 | E073 | -13127 |
chr10 | 121012037 | 121012597 | E073 | -12500 |
chr10 | 121012609 | 121014286 | E073 | -10811 |
chr10 | 121015200 | 121015317 | E073 | -9780 |
chr10 | 121023500 | 121024224 | E073 | -873 |
chr10 | 121024301 | 121024426 | E073 | -671 |
chr10 | 121030046 | 121031807 | E073 | 4949 |
chr10 | 121040477 | 121040835 | E073 | 15380 |
chr10 | 121040871 | 121041823 | E073 | 15774 |
chr10 | 121041864 | 121041998 | E073 | 16767 |
chr10 | 121042083 | 121042133 | E073 | 16986 |
chr10 | 121042141 | 121042287 | E073 | 17044 |
chr10 | 121043987 | 121044784 | E073 | 18890 |
chr10 | 121044788 | 121044912 | E073 | 19691 |
chr10 | 121047693 | 121047850 | E073 | 22596 |
chr10 | 121047911 | 121048010 | E073 | 22814 |
chr10 | 121048078 | 121048609 | E073 | 22981 |
chr10 | 121048759 | 121049607 | E073 | 23662 |
chr10 | 120994708 | 120995218 | E074 | -29879 |
chr10 | 121009955 | 121011472 | E074 | -13625 |
chr10 | 121023500 | 121024224 | E074 | -873 |
chr10 | 121024301 | 121024426 | E074 | -671 |
chr10 | 121040871 | 121041823 | E074 | 15774 |
chr10 | 121041864 | 121041998 | E074 | 16767 |
chr10 | 121042083 | 121042133 | E074 | 16986 |
chr10 | 121042141 | 121042287 | E074 | 17044 |
chr10 | 121047911 | 121048010 | E074 | 22814 |
chr10 | 121048078 | 121048609 | E074 | 22981 |
chr10 | 121049882 | 121050183 | E074 | 24785 |
chr10 | 121050200 | 121050663 | E074 | 25103 |
chr10 | 120994708 | 120995218 | E081 | -29879 |
chr10 | 121017309 | 121017928 | E081 | -7169 |
chr10 | 121017956 | 121018356 | E081 | -6741 |
chr10 | 121023500 | 121024224 | E081 | -873 |
chr10 | 121024301 | 121024426 | E081 | -671 |
chr10 | 121040871 | 121041823 | E081 | 15774 |
chr10 | 121041864 | 121041998 | E081 | 16767 |
chr10 | 121017309 | 121017928 | E082 | -7169 |
chr10 | 121017956 | 121018356 | E082 | -6741 |
chr10 | 121023500 | 121024224 | E082 | -873 |
chr10 | 121040871 | 121041823 | E082 | 15774 |