SNP Detail Info-rs7106300

Organism: Homo sapiens

Alleles: C>T

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

C==0055 (1667/29982,GnomAD)
C==0068 (1997/29118,TOPMED)
C==0063 (315/5008,1000G)
C==0035 (135/3854,ALSPAC)
C==0042 (157/3708,TWINSUK)

Position: chr11:5901477 (GRCh38.p7) (11p15.4)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	C=0.107	T=0.893
1000Genomes	American	Sub	694	C=0.050	T=0.950
1000Genomes	East Asian	Sub	1008	C=0.009	T=0.991
1000Genomes	Europe	Sub	1006	C=0.051	T=0.949
1000Genomes	Global	Study-wide	5008	C=0.063	T=0.937
1000Genomes	South Asian	Sub	978	C=0.080	T=0.920
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	C=0.035	T=0.965
The Genome Aggregation Database	African	Sub	8728	C=0.089	T=0.911
The Genome Aggregation Database	American	Sub	838	C=0.050	T=0.950
The Genome Aggregation Database	East Asian	Sub	1612	C=0.004	T=0.996
The Genome Aggregation Database	Europe	Sub	18502	C=0.043	T=0.956
The Genome Aggregation Database	Global	Study-wide	29982	C=0.055	T=0.944
The Genome Aggregation Database	Other	Sub	302	C=0.090	T=0.910
Trans-Omics for Precision Medicine	Global	Study-wide	29118	C=0.068	T=0.931
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	C=0.042	T=0.958

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs7106300	0.00037	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs7106300