SNP Detail Info-rs7114882

Organism: Homo sapiens

Alleles: T>C

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

C=0289 (8670/29960,GnomAD)
C=0246 (7178/29118,TOPMED)
C=0355 (1778/5008,1000G)
C=0254 (980/3854,ALSPAC)
C=0249 (923/3708,TWINSUK)

Position: chr11:42641807 (GRCh38.p7) (11p12)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 38 Enhancers around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 11	NC_000011.10:g.42641807T>C
GRCh37.p13 chr 11	NC_000011.9:g.42663357T>C

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	T=0.770	C=0.230
1000Genomes	American	Sub	694	T=0.740	C=0.260
1000Genomes	East Asian	Sub	1008	T=0.307	C=0.693
1000Genomes	Europe	Sub	1006	T=0.751	C=0.249
1000Genomes	Global	Study-wide	5008	T=0.645	C=0.355
1000Genomes	South Asian	Sub	978	T=0.650	C=0.350
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	T=0.746	C=0.254
The Genome Aggregation Database	African	Sub	8718	T=0.772	C=0.228
The Genome Aggregation Database	American	Sub	836	T=0.690	C=0.310
The Genome Aggregation Database	East Asian	Sub	1618	T=0.294	C=0.706
The Genome Aggregation Database	Europe	Sub	18486	T=0.717	C=0.282
The Genome Aggregation Database	Global	Study-wide	29960	T=0.710	C=0.289
The Genome Aggregation Database	Other	Sub	302	T=0.830	C=0.170
Trans-Omics for Precision Medicine	Global	Study-wide	29118	T=0.753	C=0.246
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	T=0.751	C=0.249

PMID	Title	Author	Journal
23953852	Genome-wide association studies of maximum number of drinks.	Pan Y	J Psychiatr Res

SNP ID	p-value	Traits	Study
rs7114882	8.17E-05	alcohol consumption	23953852

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr11	42646405	42646445	E068	-16912
chr11	42646450	42646773	E068	-16584
chr11	42646835	42646897	E068	-16460
chr11	42646946	42647163	E068	-16194
chr11	42613370	42613524	E070	-49833
chr11	42613590	42613664	E070	-49693
chr11	42613665	42613765	E070	-49592
chr11	42614151	42614201	E070	-49156
chr11	42613370	42613524	E071	-49833
chr11	42613590	42613664	E071	-49693
chr11	42613665	42613765	E071	-49592
chr11	42614151	42614201	E071	-49156
chr11	42614204	42614557	E071	-48800
chr11	42615140	42615313	E071	-48044
chr11	42615425	42615536	E071	-47821
chr11	42646405	42646445	E071	-16912
chr11	42646450	42646773	E071	-16584
chr11	42646835	42646897	E071	-16460
chr11	42646946	42647163	E071	-16194
chr11	42647179	42647234	E071	-16123
chr11	42647315	42647799	E071	-15558
chr11	42615140	42615313	E072	-48044
chr11	42614151	42614201	E074	-49156
chr11	42614204	42614557	E074	-48800
chr11	42615140	42615313	E074	-48044
chr11	42646405	42646445	E074	-16912
chr11	42646450	42646773	E074	-16584
chr11	42646835	42646897	E074	-16460
chr11	42646946	42647163	E074	-16194
chr11	42647179	42647234	E074	-16123
chr11	42618070	42618793	E081	-44564
chr11	42618891	42618977	E081	-44380
chr11	42619764	42620250	E081	-43107
chr11	42620455	42620505	E081	-42852
chr11	42618070	42618793	E082	-44564
chr11	42618891	42618977	E082	-44380
chr11	42678532	42679078	E082	15175
chr11	42679191	42679381	E082	15834

rs7114882