rs7117651

Homo sapiens
C>T
None
Check p-value
SNV (Single Nucleotide Variation)
T=0309 (9259/29908,GnomAD)
T=0335 (9759/29118,TOPMED)
T=0267 (1337/5008,1000G)
chr11:43299328 (GRCh38.p7) (11p12)
CD
GWASdb2
1   publication(s)
See rs on genome
43 Enhancers around
10 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 11NC_000011.10:g.43299328C>T
GRCh37.p13 chr 11NC_000011.9:g.43320878C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.475T=0.525
1000GenomesAmericanSub694C=0.810T=0.190
1000GenomesEast AsianSub1008C=0.880T=0.120
1000GenomesEuropeSub1006C=0.728T=0.272
1000GenomesGlobalStudy-wide5008C=0.733T=0.267
1000GenomesSouth AsianSub978C=0.880T=0.120
The Genome Aggregation DatabaseAfricanSub8700C=0.518T=0.482
The Genome Aggregation DatabaseAmericanSub838C=0.840T=0.160
The Genome Aggregation DatabaseEast AsianSub1612C=0.896T=0.104
The Genome Aggregation DatabaseEuropeSub18456C=0.746T=0.253
The Genome Aggregation DatabaseGlobalStudy-wide29908C=0.690T=0.309
The Genome Aggregation DatabaseOtherSub302C=0.740T=0.260
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.664T=0.335
PMID Title Author Journal
23958962Genome-wide association study of cocaine dependence and related traits: FAM53B identified as a risk gene.Gelernter JMol Psychiatry

P-Value

SNP ID p-value Traits Study
rs71176510.0000559cocaine dependence,AA23958962
rs71176510.000207cocaine dependence23958962

eQTL of rs7117651 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs7117651 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr114328948343291541E067-29337
chr114333521343335308E06714335
chr114333583643335886E06714958
chr114333588943335939E06715011
chr114333604743336092E06715169
chr114333616343336237E06715285
chr114333521343335308E06814335
chr114333583643335886E06814958
chr114333588943335939E06815011
chr114333604743336092E06815169
chr114333616343336237E06815285
chr114328948343291541E069-29337
chr114333521343335308E06914335
chr114328707443287376E070-33502
chr114328751243287694E070-33184
chr114328837743288427E070-32451
chr114328864843288890E070-31988
chr114328948343291541E070-29337
chr114333521343335308E07014335
chr114333583643335886E07014958
chr114333588943335939E07015011
chr114333604743336092E07015169
chr114333616343336237E07015285
chr114333645443336519E07015576
chr114333656343336630E07015685
chr114328948343291541E072-29337
chr114328948343291541E073-29337
chr114333521343335308E07314335
chr114333521343335308E07414335
chr114328589843286170E081-34708
chr114328664543286708E081-34170
chr114328707443287376E081-33502
chr114328837743288427E081-32451
chr114328864843288890E081-31988
chr114328948343291541E081-29337
chr114333521343335308E08114335
chr114328523243285352E082-35526
chr114328589843286170E082-34708
chr114333521343335308E08214335
chr114333583643335886E08214958
chr114333588943335939E08215011
chr114333604743336092E08215169
chr114333616343336237E08215285









Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr114333303443334394E06712156
chr114333303443334394E06812156
chr114333303443334394E06912156
chr114333303443334394E07012156
chr114333303443334394E07112156
chr114333303443334394E07212156
chr114333303443334394E07312156
chr114333303443334394E07412156
chr114333303443334394E08112156
chr114333303443334394E08212156