rs712013

Homo sapiens
G>A
None
Check p-value
SNV (Single Nucleotide Variation)
G==0107 (3217/29928,GnomAD)
G==0128 (3748/29118,TOPMED)
G==0174 (871/5008,1000G)
G==0071 (273/3854,ALSPAC)
G==0059 (219/3708,TWINSUK)
chr7:52544575 (GRCh38.p7) (7p12.1)
AD
GWASdb2
1   publication(s)
See rs on genome
14 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 7NC_000007.14:g.52544575G>A
GRCh37.p13 chr 7NC_000007.13:g.52612271G>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.188A=0.812
1000GenomesAmericanSub694G=0.080A=0.920
1000GenomesEast AsianSub1008G=0.284A=0.716
1000GenomesEuropeSub1006G=0.073A=0.927
1000GenomesGlobalStudy-wide5008G=0.174A=0.826
1000GenomesSouth AsianSub978G=0.210A=0.790
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.071A=0.929
The Genome Aggregation DatabaseAfricanSub8714G=0.200A=0.800
The Genome Aggregation DatabaseAmericanSub838G=0.070A=0.930
The Genome Aggregation DatabaseEast AsianSub1586G=0.267A=0.733
The Genome Aggregation DatabaseEuropeSub18488G=0.052A=0.947
The Genome Aggregation DatabaseGlobalStudy-wide29928G=0.107A=0.892
The Genome Aggregation DatabaseOtherSub302G=0.070A=0.930
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.128A=0.871
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.059A=0.941
PMID Title Author Journal
21703634A meta-analysis of two genome-wide association studies identifies 3 new loci for alcohol dependence.Wang KSJ Psychiatr Res

P-Value

SNP ID p-value Traits Study
rs7120134.39E-05alcohol dependence21703634

eQTL of rs712013 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs712013 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr75256956652569649E067-42622
chr75256994252570054E067-42217
chr75257013752570192E067-42079
chr75256956652569649E070-42622
chr75256994252570054E070-42217
chr75257013752570192E070-42079
chr75263822652638400E08125955
chr75263850452639271E08126233
chr75263940152639520E08127130
chr75263958552639661E08127314
chr75263971152639772E08127440
chr75263989652639964E08127625
chr75264017952640333E08127908
chr75264098952641039E08128718