SNP Detail Info-rs712013

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G==0107 (3217/29928,GnomAD)
G==0128 (3748/29118,TOPMED)
G==0174 (871/5008,1000G)
G==0071 (273/3854,ALSPAC)
G==0059 (219/3708,TWINSUK)

Position: chr7:52544575 (GRCh38.p7) (7p12.1)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 14 Enhancers around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 7	NC_000007.14:g.52544575G>A
GRCh37.p13 chr 7	NC_000007.13:g.52612271G>A

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.188	A=0.812
1000Genomes	American	Sub	694	G=0.080	A=0.920
1000Genomes	East Asian	Sub	1008	G=0.284	A=0.716
1000Genomes	Europe	Sub	1006	G=0.073	A=0.927
1000Genomes	Global	Study-wide	5008	G=0.174	A=0.826
1000Genomes	South Asian	Sub	978	G=0.210	A=0.790
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.071	A=0.929
The Genome Aggregation Database	African	Sub	8714	G=0.200	A=0.800
The Genome Aggregation Database	American	Sub	838	G=0.070	A=0.930
The Genome Aggregation Database	East Asian	Sub	1586	G=0.267	A=0.733
The Genome Aggregation Database	Europe	Sub	18488	G=0.052	A=0.947
The Genome Aggregation Database	Global	Study-wide	29928	G=0.107	A=0.892
The Genome Aggregation Database	Other	Sub	302	G=0.070	A=0.930
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.128	A=0.871
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.059	A=0.941

PMID	Title	Author	Journal
21703634	A meta-analysis of two genome-wide association studies identifies 3 new loci for alcohol dependence.	Wang KS	J Psychiatr Res

SNP ID	p-value	Traits	Study
rs712013	4.39E-05	alcohol dependence	21703634

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr7	52569566	52569649	E067	-42622
chr7	52569942	52570054	E067	-42217
chr7	52570137	52570192	E067	-42079
chr7	52569566	52569649	E070	-42622
chr7	52569942	52570054	E070	-42217
chr7	52570137	52570192	E070	-42079
chr7	52638226	52638400	E081	25955
chr7	52638504	52639271	E081	26233
chr7	52639401	52639520	E081	27130
chr7	52639585	52639661	E081	27314
chr7	52639711	52639772	E081	27440
chr7	52639896	52639964	E081	27625
chr7	52640179	52640333	E081	27908
chr7	52640989	52641039	E081	28718

rs712013