Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 11 | NC_000011.10:g.93544100C>T |
GRCh37.p13 chr 11 | NC_000011.9:g.93277266C>T |
Molecule type | Change | Amino acid[Codon] | SO Term |
---|---|---|---|
SMCO4 transcript | NM_020179.2:c. | N/A | Genic Upstream Transcript Variant |
SMCO4 transcript variant X1 | XM_011542907.1:c. | N/A | Intron Variant |
SMCO4 transcript variant X2 | XM_011542908.2:c. | N/A | Intron Variant |
SMCO4 transcript variant X2 | XM_011542909.1:c. | N/A | Intron Variant |
SMCO4 transcript variant X4 | XM_011542910.2:c. | N/A | Genic Upstream Transcript Variant |
SMCO4 transcript variant X6 | XM_011542911.2:c. | N/A | Genic Upstream Transcript Variant |
SMCO4 transcript variant X5 | XM_017018019.1:c. | N/A | Genic Upstream Transcript Variant |
SMCO4 transcript variant X5 | XM_017018020.1:c. | N/A | Genic Upstream Transcript Variant |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | C=0.586 | T=0.414 |
1000Genomes | American | Sub | 694 | C=0.330 | T=0.670 |
1000Genomes | East Asian | Sub | 1008 | C=0.445 | T=0.555 |
1000Genomes | Europe | Sub | 1006 | C=0.479 | T=0.521 |
1000Genomes | Global | Study-wide | 5008 | C=0.460 | T=0.540 |
1000Genomes | South Asian | Sub | 978 | C=0.370 | T=0.630 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | C=0.442 | T=0.558 |
The Genome Aggregation Database | African | Sub | 8696 | C=0.579 | T=0.421 |
The Genome Aggregation Database | American | Sub | 838 | C=0.300 | T=0.700 |
The Genome Aggregation Database | East Asian | Sub | 1614 | C=0.398 | T=0.602 |
The Genome Aggregation Database | Europe | Sub | 18452 | C=0.445 | T=0.555 |
The Genome Aggregation Database | Global | Study-wide | 29902 | C=0.476 | T=0.523 |
The Genome Aggregation Database | Other | Sub | 302 | C=0.360 | T=0.640 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | C=0.471 | T=0.529 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | C=0.430 | T=0.570 |
PMID | Title | Author | Journal |
---|---|---|---|
20201924 | Genome-wide association study of alcohol dependence implicates a region on chromosome 11. | Edenberg HJ | Alcohol Clin Exp Res |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs7126188 | 0.000459 | alcohol dependence | 20201924 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value |
---|---|---|---|---|
cg06895640 | chr11:93277191 | C11orf75 | 0.0546918488125789 | 2.2430e-9 |
cg15456144 | chr11:93277178 | C11orf75 | 0.0405599596463852 | 8.2617e-9 |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr11 | 93261452 | 93261786 | E067 | -15480 |
chr11 | 93261816 | 93261873 | E067 | -15393 |
chr11 | 93261934 | 93262081 | E067 | -15185 |
chr11 | 93262091 | 93263599 | E067 | -13667 |
chr11 | 93263683 | 93263778 | E067 | -13488 |
chr11 | 93269569 | 93269660 | E067 | -7606 |
chr11 | 93269687 | 93269919 | E067 | -7347 |
chr11 | 93269929 | 93270668 | E067 | -6598 |
chr11 | 93270849 | 93271436 | E067 | -5830 |
chr11 | 93257864 | 93258402 | E068 | -18864 |
chr11 | 93258700 | 93258754 | E068 | -18512 |
chr11 | 93258823 | 93259271 | E068 | -17995 |
chr11 | 93261452 | 93261786 | E068 | -15480 |
chr11 | 93261816 | 93261873 | E068 | -15393 |
chr11 | 93261934 | 93262081 | E068 | -15185 |
chr11 | 93262091 | 93263599 | E068 | -13667 |
chr11 | 93269929 | 93270668 | E068 | -6598 |
chr11 | 93270710 | 93270824 | E068 | -6442 |
chr11 | 93270849 | 93271436 | E068 | -5830 |
chr11 | 93262091 | 93263599 | E069 | -13667 |
chr11 | 93269452 | 93269502 | E069 | -7764 |
chr11 | 93269569 | 93269660 | E069 | -7606 |
chr11 | 93269687 | 93269919 | E069 | -7347 |
chr11 | 93269929 | 93270668 | E069 | -6598 |
chr11 | 93270849 | 93271436 | E069 | -5830 |
chr11 | 93271529 | 93271642 | E069 | -5624 |
chr11 | 93274517 | 93274739 | E069 | -2527 |
chr11 | 93274835 | 93274927 | E069 | -2339 |
chr11 | 93277239 | 93277351 | E069 | 0 |
chr11 | 93277359 | 93277403 | E069 | 93 |
chr11 | 93252906 | 93252989 | E070 | -24277 |
chr11 | 93269929 | 93270668 | E070 | -6598 |
chr11 | 93270710 | 93270824 | E070 | -6442 |
chr11 | 93277239 | 93277351 | E070 | 0 |
chr11 | 93277359 | 93277403 | E070 | 93 |
chr11 | 93228139 | 93228189 | E071 | -49077 |
chr11 | 93248631 | 93248917 | E071 | -28349 |
chr11 | 93258823 | 93259271 | E071 | -17995 |
chr11 | 93259306 | 93259359 | E071 | -17907 |
chr11 | 93259384 | 93259456 | E071 | -17810 |
chr11 | 93259525 | 93260293 | E071 | -16973 |
chr11 | 93261452 | 93261786 | E071 | -15480 |
chr11 | 93261816 | 93261873 | E071 | -15393 |
chr11 | 93261934 | 93262081 | E071 | -15185 |
chr11 | 93262091 | 93263599 | E071 | -13667 |
chr11 | 93268766 | 93268937 | E071 | -8329 |
chr11 | 93269452 | 93269502 | E071 | -7764 |
chr11 | 93269569 | 93269660 | E071 | -7606 |
chr11 | 93269687 | 93269919 | E071 | -7347 |
chr11 | 93269929 | 93270668 | E071 | -6598 |
chr11 | 93270710 | 93270824 | E071 | -6442 |
chr11 | 93270849 | 93271436 | E071 | -5830 |
chr11 | 93271529 | 93271642 | E071 | -5624 |
chr11 | 93261816 | 93261873 | E072 | -15393 |
chr11 | 93262091 | 93263599 | E072 | -13667 |
chr11 | 93269929 | 93270668 | E072 | -6598 |
chr11 | 93261452 | 93261786 | E073 | -15480 |
chr11 | 93261816 | 93261873 | E073 | -15393 |
chr11 | 93261934 | 93262081 | E073 | -15185 |
chr11 | 93262091 | 93263599 | E073 | -13667 |
chr11 | 93269929 | 93270668 | E073 | -6598 |
chr11 | 93270710 | 93270824 | E073 | -6442 |
chr11 | 93270849 | 93271436 | E073 | -5830 |
chr11 | 93274385 | 93274495 | E073 | -2771 |
chr11 | 93274517 | 93274739 | E073 | -2527 |
chr11 | 93274835 | 93274927 | E073 | -2339 |
chr11 | 93255761 | 93255883 | E074 | -21383 |
chr11 | 93257864 | 93258402 | E074 | -18864 |
chr11 | 93258700 | 93258754 | E074 | -18512 |
chr11 | 93258823 | 93259271 | E074 | -17995 |
chr11 | 93259306 | 93259359 | E074 | -17907 |
chr11 | 93259384 | 93259456 | E074 | -17810 |
chr11 | 93259525 | 93260293 | E074 | -16973 |
chr11 | 93261452 | 93261786 | E074 | -15480 |
chr11 | 93261816 | 93261873 | E074 | -15393 |
chr11 | 93261934 | 93262081 | E074 | -15185 |
chr11 | 93262091 | 93263599 | E074 | -13667 |
chr11 | 93263683 | 93263778 | E074 | -13488 |
chr11 | 93263836 | 93264058 | E074 | -13208 |
chr11 | 93269452 | 93269502 | E074 | -7764 |
chr11 | 93269569 | 93269660 | E074 | -7606 |
chr11 | 93269929 | 93270668 | E074 | -6598 |
chr11 | 93277239 | 93277351 | E074 | 0 |
chr11 | 93277359 | 93277403 | E074 | 93 |
chr11 | 93239031 | 93239206 | E081 | -38060 |
chr11 | 93239419 | 93239542 | E081 | -37724 |
chr11 | 93261452 | 93261786 | E081 | -15480 |
chr11 | 93261816 | 93261873 | E081 | -15393 |
chr11 | 93261934 | 93262081 | E081 | -15185 |
chr11 | 93262091 | 93263599 | E081 | -13667 |
chr11 | 93267772 | 93267832 | E081 | -9434 |
chr11 | 93268029 | 93268296 | E081 | -8970 |
chr11 | 93268607 | 93268657 | E081 | -8609 |
chr11 | 93268766 | 93268937 | E081 | -8329 |
chr11 | 93269452 | 93269502 | E081 | -7764 |
chr11 | 93269569 | 93269660 | E081 | -7606 |
chr11 | 93269687 | 93269919 | E081 | -7347 |
chr11 | 93269929 | 93270668 | E081 | -6598 |
chr11 | 93270710 | 93270824 | E081 | -6442 |
chr11 | 93270849 | 93271436 | E081 | -5830 |
chr11 | 93271529 | 93271642 | E081 | -5624 |
chr11 | 93277239 | 93277351 | E081 | 0 |
chr11 | 93277359 | 93277403 | E081 | 93 |
chr11 | 93307742 | 93307796 | E081 | 30476 |
chr11 | 93307843 | 93308181 | E081 | 30577 |
chr11 | 93308331 | 93308686 | E081 | 31065 |
chr11 | 93252002 | 93252173 | E082 | -25093 |
chr11 | 93252264 | 93252324 | E082 | -24942 |
chr11 | 93252341 | 93252501 | E082 | -24765 |
chr11 | 93252526 | 93252648 | E082 | -24618 |
chr11 | 93252649 | 93252838 | E082 | -24428 |
chr11 | 93252906 | 93252989 | E082 | -24277 |
chr11 | 93253238 | 93253347 | E082 | -23919 |
chr11 | 93253479 | 93253529 | E082 | -23737 |
chr11 | 93266072 | 93266407 | E082 | -10859 |
chr11 | 93266506 | 93266566 | E082 | -10700 |
chr11 | 93269569 | 93269660 | E082 | -7606 |
chr11 | 93269687 | 93269919 | E082 | -7347 |
chr11 | 93269929 | 93270668 | E082 | -6598 |
chr11 | 93270849 | 93271436 | E082 | -5830 |
Chromosome | Start | End | Region | Distance(-/+:Up/Downstream) |
---|---|---|---|---|
chr11 | 93274972 | 93277220 | E067 | -46 |
chr11 | 93274972 | 93277220 | E068 | -46 |
chr11 | 93274972 | 93277220 | E069 | -46 |
chr11 | 93274972 | 93277220 | E070 | -46 |
chr11 | 93274972 | 93277220 | E071 | -46 |
chr11 | 93274972 | 93277220 | E072 | -46 |
chr11 | 93274972 | 93277220 | E073 | -46 |
chr11 | 93274972 | 93277220 | E074 | -46 |
chr11 | 93274972 | 93277220 | E082 | -46 |