SNP Detail Info-rs7129741

Organism: Homo sapiens

Alleles: A>G

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A==0055 (1652/29958,GnomAD)
A==0068 (1981/29118,TOPMED)
A==0062 (309/5008,1000G)
A==0035 (135/3854,ALSPAC)
A==0042 (157/3708,TWINSUK)

Position: chr11:5902831 (GRCh38.p7) (11p15.4)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 11	NC_000011.10:g.5902831A>G
GRCh37.p13 chr 11	NC_000011.9:g.5924061A>G

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.103	G=0.897
1000Genomes	American	Sub	694	A=0.050	G=0.950
1000Genomes	East Asian	Sub	1008	A=0.009	G=0.991
1000Genomes	Europe	Sub	1006	A=0.051	G=0.949
1000Genomes	Global	Study-wide	5008	A=0.062	G=0.938
1000Genomes	South Asian	Sub	978	A=0.080	G=0.920
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.035	G=0.965
The Genome Aggregation Database	African	Sub	8722	A=0.087	G=0.913
The Genome Aggregation Database	American	Sub	836	A=0.050	G=0.950
The Genome Aggregation Database	East Asian	Sub	1604	A=0.004	G=0.996
The Genome Aggregation Database	Europe	Sub	18494	A=0.043	G=0.956
The Genome Aggregation Database	Global	Study-wide	29958	A=0.055	G=0.944
The Genome Aggregation Database	Other	Sub	302	A=0.090	G=0.910
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.068	G=0.932
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.042	G=0.958

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs7129741	0.00046	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs7129741