SNP Detail Info-rs7135349

Sequence Name	Change(s)
GRCh38.p7 chr 12	NC_000012.12:g.39890752C>T
GRCh37.p13 chr 12	NC_000012.11:g.40284554C>T

Molecule type	Change	Amino acid[Codon]	SO Term
SLC2A13 transcript	NM_052885.3:c.	N/A	Intron Variant
SLC2A13 transcript variant X1	XM_011537847.2:c.	N/A	Intron Variant
SLC2A13 transcript variant X6	XM_011537849.2:c.	N/A	Intron Variant
SLC2A13 transcript variant X7	XM_011537850.2:c.	N/A	Intron Variant
SLC2A13 transcript variant X4	XM_017018764.1:c.	N/A	Intron Variant
SLC2A13 transcript variant X5	XM_017018765.1:c.	N/A	Intron Variant
SLC2A13 transcript variant X8	XM_017018766.1:c.	N/A	Intron Variant
SLC2A13 transcript variant X2	XR_001748567.1:n.	N/A	Intron Variant
SLC2A13 transcript variant X3	XR_001748568.1:n.	N/A	Intron Variant

Molecule type	Change	Amino acid[Codon]	SO Term
C12orf40 transcript variant 1	NM_001031748.3:c.	N/A	Genic Downstream Transcript Variant
C12orf40 transcript variant 2	NM_001319247.1:c.	N/A	Genic Downstream Transcript Variant
C12orf40 transcript variant 3	NR_135051.1:n.	N/A	Intron Variant
C12orf40 transcript variant X1	XM_005268806.3:c.	N/A	Genic Downstream Transcript Variant
C12orf40 transcript variant X2	XM_011538231.2:c.	N/A	Genic Downstream Transcript Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	C=0.953	T=0.047
1000Genomes	American	Sub	694	C=0.990	T=0.010
1000Genomes	East Asian	Sub	1008	C=1.000	T=0.000
1000Genomes	Europe	Sub	1006	C=1.000	T=0.000
1000Genomes	Global	Study-wide	5008	C=0.987	T=0.013
1000Genomes	South Asian	Sub	978	C=1.000	T=0.000
The Genome Aggregation Database	African	Sub	8730	C=0.964	T=0.036
The Genome Aggregation Database	American	Sub	836	C=0.990	T=0.010
The Genome Aggregation Database	East Asian	Sub	1618	C=1.000	T=0.000
The Genome Aggregation Database	Europe	Sub	18496	C=1.000	T=0.000
The Genome Aggregation Database	Global	Study-wide	29982	C=0.989	T=0.010
The Genome Aggregation Database	Other	Sub	302	C=1.000	T=0.000
Trans-Omics for Precision Medicine	Global	Study-wide	29118	C=0.982	T=0.017

PMID	Title	Author	Journal
19268276	Genome-wide association study of smoking initiation and current smoking.	Vink JM	Am J Hum Genet

SNP ID	p-value	Traits	Study
rs7135349	5.94E-05	nicotine smoking	19268276

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr12	40298372	40298517	E067	13818
chr12	40298612	40298965	E067	14058
chr12	40298612	40298965	E068	14058
chr12	40299072	40299240	E068	14518
chr12	40298612	40298965	E069	14058
chr12	40299072	40299240	E069	14518
chr12	40278458	40279006	E070	-5548
chr12	40279030	40279080	E070	-5474
chr12	40279946	40280220	E070	-4334
chr12	40280298	40280338	E070	-4216
chr12	40281619	40281714	E070	-2840
chr12	40281766	40282016	E070	-2538
chr12	40322042	40322100	E070	37488
chr12	40322131	40322650	E070	37577
chr12	40322707	40322787	E070	38153
chr12	40299368	40299439	E071	14814
chr12	40298372	40298517	E072	13818
chr12	40298612	40298965	E072	14058
chr12	40297838	40297888	E073	13284
chr12	40298113	40298163	E073	13559
chr12	40298372	40298517	E073	13818
chr12	40298612	40298965	E073	14058
chr12	40297721	40297765	E081	13167
chr12	40297838	40297888	E081	13284
chr12	40298113	40298163	E081	13559
chr12	40298372	40298517	E081	13818
chr12	40298612	40298965	E081	14058
chr12	40299072	40299240	E081	14518
chr12	40299368	40299439	E081	14814
chr12	40300222	40300262	E081	15668
chr12	40322042	40322100	E081	37488
chr12	40322131	40322650	E081	37577
chr12	40322707	40322787	E081	38153
chr12	40324070	40324114	E081	39516
chr12	40298612	40298965	E082	14058
chr12	40299072	40299240	E082	14518
chr12	40299368	40299439	E082	14814
chr12	40322131	40322650	E082	37577
chr12	40322707	40322787	E082	38153

rs7135349