rs7160688

Homo sapiens
T>A
None
Check p-value
SNV (Single Nucleotide Variation)
A=0229 (6859/29846,GnomAD)
A=0217 (6341/29118,TOPMED)
A=0210 (1053/5008,1000G)
A=0283 (1089/3854,ALSPAC)
A=0282 (1046/3708,TWINSUK)
chr14:41316976 (GRCh38.p7) (14q21.1)
ND
GWASdb2
1   publication(s)
See rs on genome
3 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 14NC_000014.9:g.41316976T>A
GRCh37.p13 chr 14NC_000014.8:g.41786179T>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.880A=0.120
1000GenomesAmericanSub694T=0.790A=0.210
1000GenomesEast AsianSub1008T=0.834A=0.166
1000GenomesEuropeSub1006T=0.743A=0.257
1000GenomesGlobalStudy-wide5008T=0.790A=0.210
1000GenomesSouth AsianSub978T=0.670A=0.330
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.717A=0.283
The Genome Aggregation DatabaseAfricanSub8710T=0.823A=0.177
The Genome Aggregation DatabaseAmericanSub834T=0.830A=0.170
The Genome Aggregation DatabaseEast AsianSub1590T=0.805A=0.195
The Genome Aggregation DatabaseEuropeSub18410T=0.740A=0.260
The Genome Aggregation DatabaseGlobalStudy-wide29846T=0.770A=0.229
The Genome Aggregation DatabaseOtherSub302T=0.750A=0.250
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.782A=0.217
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.718A=0.282
PMID Title Author Journal
17158188Novel genes identified in a high-density genome wide association study for nicotine dependence.Bierut LJHum Mol Genet

P-Value

SNP ID p-value Traits Study
rs71606880.000193nicotine dependence17158188

eQTL of rs7160688 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs7160688 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr144175450541754720E070-31459
chr144174720041747372E081-38807
chr144174720041747372E082-38807