SNP Detail Info-rs7168475

Organism: Homo sapiens

Alleles: A>C / A>G

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

C=0183 (5486/29952,GnomAD)
C=0136 (683/5008,1000G)
C=0191 (735/3854,ALSPAC)
C=0200 (741/3708,TWINSUK)

Position: chr15:38668681 (GRCh38.p7) (15q14)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.796	C=0.204
1000Genomes	American	Sub	694	A=0.880	C=0.12,
1000Genomes	East Asian	Sub	1008	A=0.924	C=0.074
1000Genomes	Europe	Sub	1006	A=0.842	C=0.158
1000Genomes	Global	Study-wide	5008	A=0.863	C=0.136
1000Genomes	South Asian	Sub	978	A=0.900	C=0.10,
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.809	C=0.191
The Genome Aggregation Database	African	Sub	8720	A=0.801	G=0.000
The Genome Aggregation Database	American	Sub	838	A=0.870	G=0.00,
The Genome Aggregation Database	East Asian	Sub	1614	A=0.931	G=0.001
The Genome Aggregation Database	Europe	Sub	18478	A=0.810	G=0.000
The Genome Aggregation Database	Global	Study-wide	29952	A=0.816	G=0.000
The Genome Aggregation Database	Other	Sub	302	A=0.870	G=0.00,
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.800	C=0.200

PMID	Title	Author	Journal
23089632	A genome-wide association study of alcohol-dependence symptom counts in extended pedigrees identifies C15orf53.	Wang JC	Mol Psychiatry

SNP ID	p-value	Traits	Study
rs7168475	0.00000198	alcohol dependence	23089632
rs7168475	0.000466	alcohol dependence	23089632

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs7168475