SNP Detail Info-rs7172406

Sequence Name	Change(s)
GRCh38.p7 chr 15	NC_000015.10:g.33849304G>T
GRCh37.p13 chr 15	NC_000015.9:g.34141505G>T

Molecule type	Change	Amino acid[Codon]	SO Term
RYR3 transcript variant 1	NM_001036.4:c.	N/A	Intron Variant
RYR3 transcript variant 2	NM_001243996.2:c.	N/A	Intron Variant
RYR3 transcript variant X9	XM_011521880.2:c.	N/A	Intron Variant
RYR3 transcript variant X1	XM_017022468.1:c.	N/A	Intron Variant
RYR3 transcript variant X2	XM_017022469.1:c.	N/A	Intron Variant
RYR3 transcript variant X3	XM_017022470.1:c.	N/A	Intron Variant
RYR3 transcript variant X4	XM_017022471.1:c.	N/A	Intron Variant
RYR3 transcript variant X5	XM_017022472.1:c.	N/A	Intron Variant
RYR3 transcript variant X7	XM_017022473.1:c.	N/A	Intron Variant
RYR3 transcript variant X8	XM_017022474.1:c.	N/A	Intron Variant
RYR3 transcript variant X10	XM_017022475.1:c.	N/A	Intron Variant
RYR3 transcript variant X11	XM_017022476.1:c.	N/A	Intron Variant
RYR3 transcript variant X13	XM_017022477.1:c.	N/A	Genic Downstream Transcript Variant
RYR3 transcript variant X12	XR_001751369.1:n.	N/A	Intron Variant
RYR3 transcript variant X14	XR_001751370.1:n.	N/A	Genic Downstream Transcript Variant
RYR3 transcript variant X14	XR_001751371.1:n.	N/A	Genic Downstream Transcript Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.746	T=0.254
1000Genomes	American	Sub	694	G=0.980	T=0.020
1000Genomes	East Asian	Sub	1008	G=1.000	T=0.000
1000Genomes	Europe	Sub	1006	G=0.990	T=0.010
1000Genomes	Global	Study-wide	5008	G=0.898	T=0.102
1000Genomes	South Asian	Sub	978	G=0.850	T=0.150
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.997	T=0.003
The Genome Aggregation Database	African	Sub	8716	G=0.807	T=0.193
The Genome Aggregation Database	American	Sub	838	G=0.990	T=0.010
The Genome Aggregation Database	East Asian	Sub	1622	G=0.999	T=0.001
The Genome Aggregation Database	Europe	Sub	18488	G=0.997	T=0.002
The Genome Aggregation Database	Global	Study-wide	29966	G=0.942	T=0.058
The Genome Aggregation Database	Other	Sub	302	G=0.980	T=0.020
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.909	T=0.090
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.998	T=0.002

PMID	Title	Author	Journal
19268276	Genome-wide association study of smoking initiation and current smoking.	Vink JM	Am J Hum Genet

SNP ID	p-value	Traits	Study
rs7172406	1.32E-05	nicotine smoking	19268276

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr15	34164210	34164403	E067	22705
chr15	34164425	34164720	E067	22920
chr15	34157643	34158208	E068	16138
chr15	34158261	34158889	E068	16756
chr15	34164210	34164403	E068	22705
chr15	34164425	34164720	E068	22920
chr15	34164768	34164895	E068	23263
chr15	34185943	34185993	E068	44438
chr15	34185996	34186078	E068	44491
chr15	34164210	34164403	E069	22705
chr15	34164425	34164720	E069	22920
chr15	34164768	34164895	E069	23263
chr15	34118464	34118546	E070	-22959
chr15	34118619	34118810	E070	-22695
chr15	34164210	34164403	E071	22705
chr15	34164425	34164720	E071	22920
chr15	34164768	34164895	E071	23263
chr15	34164210	34164403	E072	22705
chr15	34164425	34164720	E072	22920
chr15	34164768	34164895	E072	23263
chr15	34164210	34164403	E074	22705
chr15	34164425	34164720	E074	22920
chr15	34164768	34164895	E074	23263
chr15	34185943	34185993	E074	44438
chr15	34185996	34186078	E074	44491

rs7172406