Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 15 | NC_000015.10:g.81791436T>A |
GRCh38.p7 chr 15 | NC_000015.10:g.81791436T>G |
GRCh37.p13 chr 15 | NC_000015.9:g.82083777T>A |
GRCh37.p13 chr 15 | NC_000015.9:g.82083777T>G |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | T=0.347 | G=0.648 |
1000Genomes | American | Sub | 694 | T=0.490 | G=0.51, |
1000Genomes | East Asian | Sub | 1008 | T=0.719 | G=0.281 |
1000Genomes | Europe | Sub | 1006 | T=0.223 | G=0.777 |
1000Genomes | Global | Study-wide | 5008 | T=0.409 | G=0.590 |
1000Genomes | South Asian | Sub | 978 | T=0.300 | G=0.70, |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | T=0.221 | G=0.779 |
The Genome Aggregation Database | African | Sub | 8714 | T=0.335 | G=0.662 |
The Genome Aggregation Database | American | Sub | 838 | T=0.520 | G=0.48, |
The Genome Aggregation Database | East Asian | Sub | 1614 | T=0.757 | G=0.243 |
The Genome Aggregation Database | Europe | Sub | 18458 | T=0.222 | G=0.777 |
The Genome Aggregation Database | Global | Study-wide | 29926 | T=0.292 | G=0.706 |
The Genome Aggregation Database | Other | Sub | 302 | T=0.240 | G=0.76, |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | T=0.223 | G=0.777 |
PMID | Title | Author | Journal |
---|---|---|---|
24277619 | ALDH2 is associated to alcohol dependence and is the major genetic determinant of "daily maximum drinks" in a GWAS study of an isolated rural Chinese sample. | Quillen EE | Am J Med Genet B Neuropsychiatr Genet |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs7178747 | 0.000195 | alcohol consumption (maxi-drinks) | 24277619 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr15 | 33745850 | 33745930 | E067 | 30108 |
chr15 | 33746084 | 33746181 | E067 | 30342 |
chr15 | 33746342 | 33746386 | E067 | 30600 |
chr15 | 33716477 | 33716527 | E068 | 735 |
chr15 | 33746084 | 33746181 | E068 | 30342 |
chr15 | 33746342 | 33746386 | E068 | 30600 |
chr15 | 33746571 | 33746682 | E068 | 30829 |
chr15 | 33748848 | 33748962 | E068 | 33106 |
chr15 | 33760709 | 33760823 | E068 | 44967 |
chr15 | 33717133 | 33717223 | E069 | 1391 |
chr15 | 33666350 | 33667142 | E070 | -48600 |
chr15 | 33667178 | 33667306 | E070 | -48436 |
chr15 | 33685809 | 33686354 | E070 | -29388 |
chr15 | 33686381 | 33686475 | E070 | -29267 |
chr15 | 33686526 | 33686619 | E070 | -29123 |
chr15 | 33686696 | 33686888 | E070 | -28854 |
chr15 | 33687082 | 33687197 | E070 | -28545 |
chr15 | 33689388 | 33689481 | E070 | -26261 |
chr15 | 33689530 | 33689580 | E070 | -26162 |
chr15 | 33689709 | 33689807 | E070 | -25935 |
chr15 | 33690590 | 33690737 | E070 | -25005 |
chr15 | 33690844 | 33690922 | E070 | -24820 |
chr15 | 33711897 | 33712482 | E070 | -3260 |
chr15 | 33721819 | 33721879 | E070 | 6077 |
chr15 | 33760709 | 33760823 | E071 | 44967 |
chr15 | 33761097 | 33761258 | E071 | 45355 |
chr15 | 33685809 | 33686354 | E074 | -29388 |
chr15 | 33717133 | 33717223 | E074 | 1391 |
chr15 | 33717325 | 33717681 | E074 | 1583 |
chr15 | 33666098 | 33666305 | E081 | -49437 |
chr15 | 33666350 | 33667142 | E081 | -48600 |
chr15 | 33667178 | 33667306 | E081 | -48436 |
chr15 | 33686381 | 33686475 | E081 | -29267 |
chr15 | 33686526 | 33686619 | E081 | -29123 |
chr15 | 33686696 | 33686888 | E081 | -28854 |
chr15 | 33690590 | 33690737 | E081 | -25005 |
chr15 | 33690844 | 33690922 | E081 | -24820 |
chr15 | 33691073 | 33691123 | E081 | -24619 |
chr15 | 33694568 | 33695170 | E081 | -20572 |
chr15 | 33711544 | 33711697 | E081 | -4045 |
chr15 | 33711897 | 33712482 | E081 | -3260 |
chr15 | 33712716 | 33712968 | E081 | -2774 |
chr15 | 33713043 | 33713093 | E081 | -2649 |
chr15 | 33665901 | 33665951 | E082 | -49791 |
chr15 | 33666098 | 33666305 | E082 | -49437 |
chr15 | 33689388 | 33689481 | E082 | -26261 |
chr15 | 33689530 | 33689580 | E082 | -26162 |
chr15 | 33689709 | 33689807 | E082 | -25935 |
chr15 | 33690590 | 33690737 | E082 | -25005 |
chr15 | 33690844 | 33690922 | E082 | -24820 |
chr15 | 33710740 | 33710790 | E082 | -4952 |
chr15 | 33712716 | 33712968 | E082 | -2774 |
chr15 | 33760709 | 33760823 | E082 | 44967 |
chr15 | 33761097 | 33761258 | E082 | 45355 |