rs7179379

Homo sapiens
C>T
None
Check p-value
SNV (Single Nucleotide Variation)
T=0447 (13371/29854,GnomAD)
T=0491 (2459/5008,1000G)
T=0415 (1598/3854,ALSPAC)
T=0412 (1528/3708,TWINSUK)
chr15:57567529 (GRCh38.p7) (15q21.3)
AD
GWASdb2
1   publication(s)
See rs on genome
147 Enhancers around
8 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 15NC_000015.10:g.57567529C>T
GRCh37.p13 chr 15NC_000015.9:g.57859727C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.446T=0.554
1000GenomesAmericanSub694C=0.430T=0.570
1000GenomesEast AsianSub1008C=0.555T=0.445
1000GenomesEuropeSub1006C=0.574T=0.426
1000GenomesGlobalStudy-wide5008C=0.509T=0.491
1000GenomesSouth AsianSub978C=0.540T=0.460
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.585T=0.415
The Genome Aggregation DatabaseAfricanSub8700C=0.485T=0.515
The Genome Aggregation DatabaseAmericanSub836C=0.500T=0.500
The Genome Aggregation DatabaseEast AsianSub1616C=0.555T=0.445
The Genome Aggregation DatabaseEuropeSub18400C=0.584T=0.415
The Genome Aggregation DatabaseGlobalStudy-wide29854C=0.552T=0.447
The Genome Aggregation DatabaseOtherSub302C=0.650T=0.350
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.588T=0.412
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs71793790.00058alcohol dependence20201924

eQTL of rs7179379 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs7179379 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr155781390157814035E067-45692
chr155781407457814144E067-45583
chr155781421557814762E067-44965
chr155781930957820142E067-39585
chr155782018857820248E067-39479
chr155782908957829608E067-30119
chr155782965057829700E067-30027
chr155782984757829924E067-29803
chr155782993157830010E067-29717
chr155784641257847278E067-12449
chr155784735557847395E067-12332
chr155784740457847978E067-11749
chr155781421557814762E068-44965
chr155781930957820142E068-39585
chr155782018857820248E068-39479
chr155782334957823439E068-36288
chr155782472657824841E068-34886
chr155782491657825041E068-34686
chr155782516557826377E068-33350
chr155782643957826838E068-32889
chr155782693257827022E068-32705
chr155782723657827344E068-32383
chr155782898257829072E068-30655
chr155782908957829608E068-30119
chr155782965057829700E068-30027
chr155782984757829924E068-29803
chr155782993157830010E068-29717
chr155783014957830243E068-29484
chr155783034057830559E068-29168
chr155784199657842564E068-17163
chr155784274157843198E068-16529
chr155784326857843462E068-16265
chr155784525757845392E068-14335
chr155784543757845509E068-14218
chr155784553357846018E068-13709
chr155784602257846166E068-13561
chr155784641257847278E068-12449
chr155784735557847395E068-12332
chr155784740457847978E068-11749
chr155788099057881070E06821263
chr155788118357881273E06821456
chr155788134457881423E06821617
chr155781380057813864E069-45863
chr155781390157814035E069-45692
chr155781407457814144E069-45583
chr155781421557814762E069-44965
chr155781930957820142E069-39585
chr155782309357823329E069-36398
chr155782334957823439E069-36288
chr155782516557826377E069-33350
chr155782908957829608E069-30119
chr155784199657842564E069-17163
chr155784326857843462E069-16265
chr155784553357846018E069-13709
chr155784602257846166E069-13561
chr155784641257847278E069-12449
chr155784735557847395E069-12332
chr155789644757897249E06936720
chr155781930957820142E070-39585
chr155782018857820248E070-39479
chr155782240557822461E070-37266
chr155782270057822740E070-36987
chr155782279057822870E070-36857
chr155782309357823329E070-36398
chr155782334957823439E070-36288
chr155782516557826377E070-33350
chr155784641257847278E070-12449
chr155782270057822740E071-36987
chr155782279057822870E071-36857
chr155782309357823329E071-36398
chr155782491657825041E071-34686
chr155782516557826377E071-33350
chr155782643957826838E071-32889
chr155782693257827022E071-32705
chr155782898257829072E071-30655
chr155782908957829608E071-30119
chr155784274157843198E071-16529
chr155784326857843462E071-16265
chr155784495157845186E071-14541
chr155784543757845509E071-14218
chr155784553357846018E071-13709
chr155784602257846166E071-13561
chr155784641257847278E071-12449
chr155784735557847395E071-12332
chr155784740457847978E071-11749
chr155788155357882255E07121826
chr155788225657882367E07122529
chr155789644757897249E07136720
chr155781930957820142E072-39585
chr155782018857820248E072-39479
chr155782309357823329E072-36398
chr155782334957823439E072-36288
chr155782516557826377E072-33350
chr155782908957829608E072-30119
chr155782965057829700E072-30027
chr155782984757829924E072-29803
chr155782993157830010E072-29717
chr155783014957830243E072-29484
chr155783034057830559E072-29168
chr155783436057834902E072-24825
chr155784602257846166E072-13561
chr155784641257847278E072-12449
chr155784735557847395E072-12332
chr155784740457847978E072-11749
chr155781930957820142E073-39585
chr155782018857820248E073-39479
chr155782270057822740E073-36987
chr155782279057822870E073-36857
chr155782309357823329E073-36398
chr155782516557826377E073-33350
chr155782898257829072E073-30655
chr155782908957829608E073-30119
chr155784326857843462E073-16265
chr155784349557843896E073-15831
chr155784553357846018E073-13709
chr155784602257846166E073-13561
chr155784641257847278E073-12449
chr155789644757897249E07336720
chr155781380057813864E074-45863
chr155781390157814035E074-45692
chr155781407457814144E074-45583
chr155781421557814762E074-44965
chr155781930957820142E074-39585
chr155782018857820248E074-39479
chr155782240557822461E074-37266
chr155782270057822740E074-36987
chr155782279057822870E074-36857
chr155782309357823329E074-36398
chr155782334957823439E074-36288
chr155782491657825041E074-34686
chr155782516557826377E074-33350
chr155782984757829924E074-29803
chr155784641257847278E074-12449
chr155784735557847395E074-12332
chr155784740457847978E074-11749
chr155785897757859508E074-219
chr155788055857880944E07420831
chr155788099057881070E07421263
chr155788118357881273E07421456
chr155788134457881423E07421617
chr155783418957834348E081-25379
chr155783436057834902E081-24825
chr155784641257847278E081-12449
chr155784602257846166E082-13561
chr155784641257847278E082-12449
chr155784735557847395E082-12332
chr155784740457847978E082-11749










Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr155788335657885099E06723629
chr155788335657885099E06823629
chr155788335657885099E06923629
chr155788335657885099E07123629
chr155788335657885099E07223629
chr155788335657885099E07323629
chr155788335657885099E07423629
chr155788335657885099E08223629