rs7181753

Homo sapiens
C>T
NR2F2-AS1 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
T=0224 (6717/29918,GnomAD)
T=0266 (7749/29118,TOPMED)
T=0255 (1279/5008,1000G)
T=0188 (726/3854,ALSPAC)
T=0183 (679/3708,TWINSUK)
chr15:96301498 (GRCh38.p7) (15q26.2)
AD
GWASCatalog
1   publication(s)
See rs on genome
0 Enhancer around
13 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 15NC_000015.10:g.96301498C>T
GRCh37.p13 chr 15NC_000015.9:g.96844727C>T

Gene: NR2F2-AS1, NR2F2 antisense RNA 1(minus strand)

Molecule type Change Amino acid[Codon] SO Term
NR2F2-AS1 transcript variant 1NR_102743.1:n.N/AIntron Variant
NR2F2-AS1 transcript variant 2NR_102744.1:n.N/AIntron Variant
NR2F2-AS1 transcript variant 3NR_125738.1:n.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.600T=0.400
1000GenomesAmericanSub694C=0.760T=0.240
1000GenomesEast AsianSub1008C=0.866T=0.134
1000GenomesEuropeSub1006C=0.826T=0.174
1000GenomesGlobalStudy-wide5008C=0.745T=0.255
1000GenomesSouth AsianSub978C=0.720T=0.280
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.812T=0.188
The Genome Aggregation DatabaseAfricanSub8706C=0.651T=0.349
The Genome Aggregation DatabaseAmericanSub836C=0.790T=0.210
The Genome Aggregation DatabaseEast AsianSub1614C=0.898T=0.102
The Genome Aggregation DatabaseEuropeSub18460C=0.823T=0.177
The Genome Aggregation DatabaseGlobalStudy-wide29918C=0.775T=0.224
The Genome Aggregation DatabaseOtherSub302C=0.780T=0.220
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.733T=0.266
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.817T=0.183
PMID Title Author Journal
22554406Family-based genome-wide association study of frontal theta oscillations identifies potassium channel gene KCNJ6.Kang SJGenes Brain Behav

P-Value

SNP ID p-value Traits Study
rs71817533E-06alcohol dependence22554406

eQTL of rs7181753 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs7181753 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr159687231996892606E06827592
chr159686382296871987E07019095
chr159687231996892606E07027592
chr159686382296871987E07119095
chr159687231996892606E07127592
chr159687231996892606E07227592
chr159686382296871987E07319095
chr159687231996892606E07327592
chr159686382296871987E07419095
chr159687231996892606E07427592
chr159687200796872209E08127280
chr159687231996892606E08127592
chr159687231996892606E08227592