rs7199896

Homo sapiens
T>A
None
Check p-value
SNV (Single Nucleotide Variation)
T==0056 (1654/29118,TOPMED)
T==0090 (451/5008,1000G)
T==0049 (189/3854,ALSPAC)
T==0050 (185/3708,TWINSUK)
chr16:58339080 (GRCh38.p7) (16q21)
AD
GWASCatalog
1   publication(s)
See rs on genome
38 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 16NC_000016.10:g.58339080T>A
GRCh37.p13 chr 16NC_000016.9:g.58372984T>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.089A=0.911
1000GenomesAmericanSub694T=0.020A=0.980
1000GenomesEast AsianSub1008T=0.199A=0.801
1000GenomesEuropeSub1006T=0.056A=0.944
1000GenomesGlobalStudy-wide5008T=0.090A=0.910
1000GenomesSouth AsianSub978T=0.060A=0.940
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.049A=0.951
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.056A=0.943
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.050A=0.950
PMID Title Author Journal
26365420The genetics of alcohol dependence: Twin and SNP-based heritability, and genome-wide association study based on AUDIT scores.Mbarek HAm J Med Genet B Neuropsychiatr Genet

P-Value

SNP ID p-value Traits Study
rs71998965E-06alcohol dependence26365420

eQTL of rs7199896 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs7199896 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr165832869658328863E067-44121
chr165832888258329063E067-43921
chr165832912358329319E067-43665
chr165832935058329477E067-43507
chr165837051658371347E067-1637
chr165832869658328863E068-44121
chr165835148058351569E068-21415
chr165835162658351745E068-21239
chr165835186358352052E068-20932
chr165835209458352373E068-20611
chr165838097158381022E0687987
chr165838102658381169E0688042
chr165838142258381504E0688438
chr165832869658328863E069-44121
chr165832776858327903E071-45081
chr165832795658328036E071-44948
chr165838097158381022E0717987
chr165838102658381169E0718042
chr165838142258381504E0718438
chr165832869658328863E072-44121
chr165832888258329063E072-43921
chr165832912358329319E072-43665
chr165832935058329477E072-43507
chr165832869658328863E073-44121
chr165832888258329063E073-43921
chr165832912358329319E073-43665
chr165832935058329477E073-43507
chr165838097158381022E0737987
chr165838102658381169E0738042
chr165838142258381504E0738438
chr165832869658328863E074-44121
chr165832888258329063E074-43921
chr165835162658351745E074-21239
chr165835186358352052E074-20932
chr165835148058351569E081-21415
chr165835162658351745E081-21239
chr165835186358352052E081-20932
chr165835209458352373E081-20611