rs7201620

Homo sapiens
G>A
None
Check p-value
SNV (Single Nucleotide Variation)
A=0325 (9730/29928,GnomAD)
A=0326 (9493/29118,TOPMED)
A=0328 (1641/5008,1000G)
A=0410 (1582/3854,ALSPAC)
A=0393 (1457/3708,TWINSUK)
chr16:52885164 (GRCh38.p7) (16q12.2)
AD
GWASdb2
1   publication(s)
See rs on genome
38 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 16NC_000016.10:g.52885164G>A
GRCh37.p13 chr 16NC_000016.9:g.52919076G>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.769A=0.231
1000GenomesAmericanSub694G=0.750A=0.250
1000GenomesEast AsianSub1008G=0.717A=0.283
1000GenomesEuropeSub1006G=0.573A=0.427
1000GenomesGlobalStudy-wide5008G=0.672A=0.328
1000GenomesSouth AsianSub978G=0.540A=0.460
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.590A=0.410
The Genome Aggregation DatabaseAfricanSub8718G=0.769A=0.231
The Genome Aggregation DatabaseAmericanSub836G=0.740A=0.260
The Genome Aggregation DatabaseEast AsianSub1614G=0.731A=0.269
The Genome Aggregation DatabaseEuropeSub18458G=0.624A=0.375
The Genome Aggregation DatabaseGlobalStudy-wide29928G=0.674A=0.325
The Genome Aggregation DatabaseOtherSub302G=0.540A=0.460
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.674A=0.326
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.607A=0.393
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs72016200.000946alcohol dependence20201924

eQTL of rs7201620 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs7201620 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr165290787052907968E067-11108
chr165290798152908316E067-10760
chr165287401452874065E070-45011
chr165287443752874491E070-44585
chr165287476052874800E070-44276
chr165288940752889457E070-29619
chr165288964852889822E070-29254
chr165289501752895227E070-23849
chr165289529152895927E070-23149
chr165289595052896058E070-23018
chr165289608552896297E070-22779
chr165290581952905859E070-13217
chr165290633352906392E070-12684
chr165290669552906947E070-12129
chr165290741252907462E070-11614
chr165290787052907968E070-11108
chr165290798152908316E070-10760
chr165290850152908591E070-10485
chr165290911852909428E070-9648
chr165294309752943221E07024021
chr165294332552943423E07024249
chr165294619952947014E07027123
chr165290787052907968E071-11108
chr165290798152908316E071-10760
chr165290850152908591E071-10485
chr165294619952947014E07127123
chr165290741252907462E074-11614
chr165290787052907968E074-11108
chr165289501752895227E081-23849
chr165289529152895927E081-23149
chr165289595052896058E081-23018
chr165289608552896297E081-22779
chr165291929052919433E081214
chr165291949152919800E081415
chr165289501752895227E082-23849
chr165289529152895927E082-23149
chr165289595052896058E082-23018
chr165289608552896297E082-22779