Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 17 | NC_000017.11:g.8573425C>T |
GRCh37.p13 chr 17 | NC_000017.10:g.8476743C>T |
MYH10 RefSeqGene | NG_042305.1:g.62337G>A |
Molecule type | Change | Amino acid[Codon] | SO Term |
---|---|---|---|
MYH10 transcript variant 1 | NM_001256012.1:c. | N/A | Intron Variant |
MYH10 transcript variant 3 | NM_001256095.1:c. | N/A | Intron Variant |
MYH10 transcript variant 2 | NM_005964.3:c. | N/A | Intron Variant |
MYH10 transcript variant X10 | XM_011523875.2:c. | N/A | Intron Variant |
MYH10 transcript variant X1 | XM_011523878.2:c. | N/A | Intron Variant |
MYH10 transcript variant X2 | XM_011523879.2:c. | N/A | Intron Variant |
MYH10 transcript variant X3 | XM_011523880.2:c. | N/A | Intron Variant |
MYH10 transcript variant X4 | XM_017024677.1:c. | N/A | Intron Variant |
MYH10 transcript variant X5 | XM_017024678.1:c. | N/A | Intron Variant |
MYH10 transcript variant X6 | XM_017024679.1:c. | N/A | Intron Variant |
MYH10 transcript variant X7 | XM_017024680.1:c. | N/A | Intron Variant |
MYH10 transcript variant X8 | XM_017024681.1:c. | N/A | Intron Variant |
MYH10 transcript variant X9 | XM_017024682.1:c. | N/A | Intron Variant |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | C=0.970 | T=0.030 |
1000Genomes | American | Sub | 694 | C=0.980 | T=0.020 |
1000Genomes | East Asian | Sub | 1008 | C=0.807 | T=0.193 |
1000Genomes | Europe | Sub | 1006 | C=0.978 | T=0.022 |
1000Genomes | Global | Study-wide | 5008 | C=0.944 | T=0.056 |
1000Genomes | South Asian | Sub | 978 | C=0.990 | T=0.010 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | C=0.976 | T=0.024 |
The Genome Aggregation Database | African | Sub | 8722 | C=0.967 | T=0.033 |
The Genome Aggregation Database | American | Sub | 838 | C=0.990 | T=0.010 |
The Genome Aggregation Database | East Asian | Sub | 1620 | C=0.810 | T=0.190 |
The Genome Aggregation Database | Europe | Sub | 18492 | C=0.965 | T=0.034 |
The Genome Aggregation Database | Global | Study-wide | 29974 | C=0.958 | T=0.041 |
The Genome Aggregation Database | Other | Sub | 302 | C=0.970 | T=0.030 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | C=0.972 | T=0.027 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | C=0.977 | T=0.023 |
PMID | Title | Author | Journal |
---|---|---|---|
21314694 | Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample. | Kendler KS | Alcohol Clin Exp Res |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs7208821 | 0.000741 | alcohol dependence | 21314694 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr17 | 8509571 | 8510185 | E067 | 32828 |
chr17 | 8510192 | 8510258 | E067 | 33449 |
chr17 | 8524959 | 8525238 | E067 | 48216 |
chr17 | 8525281 | 8525535 | E067 | 48538 |
chr17 | 8525650 | 8525762 | E067 | 48907 |
chr17 | 8509571 | 8510185 | E068 | 32828 |
chr17 | 8510192 | 8510258 | E068 | 33449 |
chr17 | 8509571 | 8510185 | E069 | 32828 |
chr17 | 8510192 | 8510258 | E069 | 33449 |
chr17 | 8466462 | 8466611 | E070 | -10132 |
chr17 | 8484195 | 8485211 | E070 | 7452 |
chr17 | 8509571 | 8510185 | E070 | 32828 |
chr17 | 8510192 | 8510258 | E070 | 33449 |
chr17 | 8511807 | 8512156 | E070 | 35064 |
chr17 | 8524133 | 8524216 | E070 | 47390 |
chr17 | 8524389 | 8524455 | E070 | 47646 |
chr17 | 8524612 | 8524714 | E070 | 47869 |
chr17 | 8524959 | 8525238 | E070 | 48216 |
chr17 | 8525281 | 8525535 | E070 | 48538 |
chr17 | 8525650 | 8525762 | E070 | 48907 |
chr17 | 8509571 | 8510185 | E071 | 32828 |
chr17 | 8510192 | 8510258 | E071 | 33449 |
chr17 | 8509571 | 8510185 | E073 | 32828 |
chr17 | 8510192 | 8510258 | E073 | 33449 |
chr17 | 8439335 | 8439603 | E081 | -37140 |
chr17 | 8509571 | 8510185 | E081 | 32828 |
chr17 | 8510192 | 8510258 | E081 | 33449 |
chr17 | 8524133 | 8524216 | E081 | 47390 |
chr17 | 8524389 | 8524455 | E081 | 47646 |
chr17 | 8524612 | 8524714 | E081 | 47869 |
chr17 | 8524959 | 8525238 | E081 | 48216 |
chr17 | 8439335 | 8439603 | E082 | -37140 |
chr17 | 8466462 | 8466611 | E082 | -10132 |
chr17 | 8484195 | 8485211 | E082 | 7452 |
chr17 | 8509571 | 8510185 | E082 | 32828 |
chr17 | 8510192 | 8510258 | E082 | 33449 |
chr17 | 8524133 | 8524216 | E082 | 47390 |
chr17 | 8524389 | 8524455 | E082 | 47646 |