SNP Detail Info-rs7209096

Organism: Homo sapiens

Alleles: G>A / G>C

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G==0463 (13878/29916,GnomAD)
G==0483 (14068/29118,TOPMED)
G==0496 (2483/5008,1000G)
G==0436 (1682/3854,ALSPAC)
G==0425 (1575/3708,TWINSUK)

Position: chr17:1325928 (GRCh38.p7) (17p13.3)

Phenotype: ND

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.571	A=0.429
1000Genomes	American	Sub	694	G=0.330	A=0.670
1000Genomes	East Asian	Sub	1008	G=0.540	A=0.460
1000Genomes	Europe	Sub	1006	G=0.474	A=0.526
1000Genomes	Global	Study-wide	5008	G=0.496	A=0.504
1000Genomes	South Asian	Sub	978	G=0.490	A=0.510
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.436	A=0.564
The Genome Aggregation Database	African	Sub	8704	G=0.547	A=0.453
The Genome Aggregation Database	American	Sub	836	G=0.330	A=0.67,
The Genome Aggregation Database	East Asian	Sub	1616	G=0.531	A=0.469
The Genome Aggregation Database	Europe	Sub	18458	G=0.424	A=0.575
The Genome Aggregation Database	Global	Study-wide	29916	G=0.463	A=0.535
The Genome Aggregation Database	Other	Sub	302	G=0.510	A=0.49,
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.483	A=0.516
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.425	A=0.575

PMID	Title	Author	Journal
17158188	Novel genes identified in a high-density genome wide association study for nicotine dependence.	Bierut LJ	Hum Mol Genet

SNP ID	p-value	Traits	Study
rs7209096	0.000109	nicotine dependence	17158188

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
Chr17:1229222	CRK	ENSG00000167193.7	G>A	6.5377e-4	-137234	Anterior_cingulate_cortex

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs7209096