rs7245090

Homo sapiens
T>G
ZNF532 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
G=0074 (2222/29960,GnomAD)
G=0115 (3360/29118,TOPMED)
G=0082 (409/5008,1000G)
G=0023 (89/3854,ALSPAC)
G=0021 (79/3708,TWINSUK)
chr18:58968091 (GRCh38.p7) (18q21.32)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 18NC_000018.10:g.58968091T>G
GRCh37.p13 chr 18NC_000018.9:g.56635323T>G

Gene: ZNF532, zinc finger protein 532(plus strand)

Molecule type Change Amino acid[Codon] SO Term
ZNF532 transcript variant 2NM_001318726.1:c.N/AIntron Variant
ZNF532 transcript variant 3NM_001318727.1:c.N/AIntron Variant
ZNF532 transcript variant 4NM_001318728.1:c.N/AIntron Variant
ZNF532 transcript variant 1NM_018181.5:c.N/AIntron Variant
ZNF532 transcript variant X12XM_011526054.2:c.N/AIntron Variant
ZNF532 transcript variant X1XM_017025809.1:c.N/AIntron Variant
ZNF532 transcript variant X2XM_017025810.1:c.N/AIntron Variant
ZNF532 transcript variant X3XM_017025811.1:c.N/AIntron Variant
ZNF532 transcript variant X5XM_017025812.1:c.N/AIntron Variant
ZNF532 transcript variant X5XM_017025813.1:c.N/AIntron Variant
ZNF532 transcript variant X7XM_017025814.1:c.N/AIntron Variant
ZNF532 transcript variant X8XM_017025815.1:c.N/AIntron Variant
ZNF532 transcript variant X8XM_017025816.1:c.N/AIntron Variant
ZNF532 transcript variant X9XM_017025817.1:c.N/AIntron Variant
ZNF532 transcript variant X10XM_017025818.1:c.N/AIntron Variant
ZNF532 transcript variant X11XM_017025819.1:c.N/AIntron Variant
ZNF532 transcript variant X9XM_017025820.1:c.N/AIntron Variant
ZNF532 transcript variant X14XM_017025821.1:c.N/AIntron Variant
ZNF532 transcript variant X15XM_017025822.1:c.N/AIntron Variant
ZNF532 transcript variant X10XM_017025823.1:c.N/AIntron Variant
ZNF532 transcript variant X11XM_017025824.1:c.N/AIntron Variant
ZNF532 transcript variant X19XM_017025825.1:c.N/AIntron Variant
ZNF532 transcript variant X20XM_017025826.1:c.N/AIntron Variant
ZNF532 transcript variant X21XM_017025827.1:c.N/AIntron Variant
ZNF532 transcript variant X22XM_017025828.1:c.N/AIntron Variant
ZNF532 transcript variant X15XM_017025829.1:c.N/AIntron Variant
ZNF532 transcript variant X16XM_017025830.1:c.N/AIntron Variant
ZNF532 transcript variant X27XM_017025831.1:c.N/AIntron Variant
ZNF532 transcript variant X17XM_011526067.2:c.N/AGenic Downstream Transcript Variant
ZNF532 transcript variant X14XR_001753209.1:n.N/AIntron Variant
ZNF532 transcript variant X26XR_001753210.1:n.N/AIntron Variant
ZNF532 transcript variant X21XR_001753211.1:n.N/AIntron Variant
ZNF532 transcript variant X22XR_001753212.1:n.N/AIntron Variant
ZNF532 transcript variant X33XR_001753213.1:n.N/AIntron Variant
ZNF532 transcript variant X12XR_935228.2:n.N/AIntron Variant
ZNF532 transcript variant X20XR_935229.2:n.N/AGenic Downstream Transcript Variant
ZNF532 transcript variant X19XR_935231.2:n.N/AGenic Downstream Transcript Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.787G=0.213
1000GenomesAmericanSub694T=0.950G=0.050
1000GenomesEast AsianSub1008T=0.988G=0.012
1000GenomesEuropeSub1006T=0.970G=0.030
1000GenomesGlobalStudy-wide5008T=0.918G=0.082
1000GenomesSouth AsianSub978T=0.950G=0.050
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.977G=0.023
The Genome Aggregation DatabaseAfricanSub8706T=0.791G=0.209
The Genome Aggregation DatabaseAmericanSub838T=0.960G=0.040
The Genome Aggregation DatabaseEast AsianSub1620T=0.998G=0.002
The Genome Aggregation DatabaseEuropeSub18494T=0.981G=0.018
The Genome Aggregation DatabaseGlobalStudy-wide29960T=0.925G=0.074
The Genome Aggregation DatabaseOtherSub302T=0.940G=0.060
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.884G=0.115
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.979G=0.021
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs72450900.00013alcohol dependence20201924

eQTL of rs7245090 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
Chr18:56635323GRPENSG00000134443.5T>G1.0577e-2-252077Cortex

meQTL of rs7245090 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr185658810456588210E067-47113
chr185658826656588341E067-46982
chr185658853656588616E067-46707
chr185658883656588886E067-46437
chr185658948956589539E067-45784
chr185658963756589687E067-45636
chr185658972556589795E067-45528
chr185658989556589971E067-45352
chr185659007056590122E067-45201
chr185659035756590407E067-44916
chr185659059156590641E067-44682
chr185659068056591078E067-44245
chr185659443656594587E067-40736
chr185659460256594841E067-40482
chr185659498356595243E067-40080
chr185659535256595584E067-39739
chr185659559356595882E067-39441
chr185659596156596059E067-39264
chr185659633456596440E067-38883
chr185659644856596775E067-38548
chr185659691256597011E067-38312
chr185659708656597340E067-37983
chr185659865856598788E067-36535
chr185660173656601849E067-33474
chr185660241256602858E067-32465
chr185660325256603334E067-31989
chr185660340256603595E067-31728
chr185660378056603820E067-31503
chr185660407556604223E067-31100
chr185660447456604866E067-30457
chr185660499356605115E067-30208
chr185660513856605249E067-30074
chr185660528356605354E067-29969
chr185660974356609924E067-25399
chr185660992756610073E067-25250
chr185661116856611250E067-24073
chr185661171056611760E067-23563
chr185661181956611915E067-23408
chr185661228556612451E067-22872
chr185661246656612517E067-22806
chr185661254356612614E067-22709
chr185661278856612838E067-22485
chr185662091256621555E067-13768
chr185663234756632484E067-2839
chr185663256856633008E067-2315
chr185663305456633507E067-1816
chr185663356556634224E067-1099
chr185663423056634389E067-934
chr185663439456634473E067-850
chr185663457056634652E067-671
chr185663489156635034E067-289
chr185663504256635465E0670
chr185664458956644773E0679266
chr185664497556645153E0679652
chr185664688156646936E06711558
chr185664696656647041E06711643
chr185664711156647197E06711788
chr185664722456647385E06711901
chr185658810456588210E068-47113
chr185658826656588341E068-46982
chr185658853656588616E068-46707
chr185658883656588886E068-46437
chr185658948956589539E068-45784
chr185658963756589687E068-45636
chr185658972556589795E068-45528
chr185658989556589971E068-45352
chr185659007056590122E068-45201
chr185659035756590407E068-44916
chr185659059156590641E068-44682
chr185659068056591078E068-44245
chr185659406656594229E068-41094
chr185659443656594587E068-40736
chr185659460256594841E068-40482
chr185659498356595243E068-40080
chr185659535256595584E068-39739
chr185659559356595882E068-39441
chr185659596156596059E068-39264
chr185659633456596440E068-38883
chr185659644856596775E068-38548
chr185659691256597011E068-38312
chr185659708656597340E068-37983
chr185659746156597567E068-37756
chr185659760756597651E068-37672
chr185659865856598788E068-36535
chr185660325256603334E068-31989
chr185660340256603595E068-31728
chr185660378056603820E068-31503
chr185660407556604223E068-31100
chr185660447456604866E068-30457
chr185660499356605115E068-30208
chr185660513856605249E068-30074
chr185660528356605354E068-29969
chr185661024956610363E068-24960
chr185661116856611250E068-24073
chr185661171056611760E068-23563
chr185661181956611915E068-23408
chr185661228556612451E068-22872
chr185661246656612517E068-22806
chr185661254356612614E068-22709
chr185661278856612838E068-22485
chr185663107556631733E068-3590
chr185663234756632484E068-2839
chr185663256856633008E068-2315
chr185663305456633507E068-1816
chr185663356556634224E068-1099
chr185663423056634389E068-934
chr185663439456634473E068-850
chr185663457056634652E068-671
chr185663489156635034E068-289
chr185663504256635465E0680
chr185663553556635625E068212
chr185663565556635837E068332
chr185663589956635964E068576
chr185663605656636096E068733
chr185663616956636368E068846
chr185663637056636682E0681047
chr185663676756636856E0681444
chr185664207756642260E0686754
chr185664315756643223E0687834
chr185664322956643470E0687906
chr185664696656647041E06811643
chr185664711156647197E06811788
chr185664722456647385E06811901
chr185664763856647776E06812315
chr185665788556658508E06822562
chr185666009656660854E06824773
chr185666499956666508E06829676
chr185658826656588341E069-46982
chr185658853656588616E069-46707
chr185658883656588886E069-46437
chr185658948956589539E069-45784
chr185658963756589687E069-45636
chr185658972556589795E069-45528
chr185658989556589971E069-45352
chr185659007056590122E069-45201
chr185659035756590407E069-44916
chr185659059156590641E069-44682
chr185659068056591078E069-44245
chr185659443656594587E069-40736
chr185659460256594841E069-40482
chr185659498356595243E069-40080
chr185659535256595584E069-39739
chr185659559356595882E069-39441
chr185659596156596059E069-39264
chr185659633456596440E069-38883
chr185659644856596775E069-38548
chr185659691256597011E069-38312
chr185659865856598788E069-36535
chr185660241256602858E069-32465
chr185660325256603334E069-31989
chr185660340256603595E069-31728
chr185660378056603820E069-31503
chr185660407556604223E069-31100
chr185660447456604866E069-30457
chr185660499356605115E069-30208
chr185660513856605249E069-30074
chr185660528356605354E069-29969
chr185661116856611250E069-24073
chr185661171056611760E069-23563
chr185661181956611915E069-23408
chr185661228556612451E069-22872
chr185661246656612517E069-22806
chr185661254356612614E069-22709
chr185661278856612838E069-22485
chr185662783356627897E069-7426
chr185662794656628054E069-7269
chr185662807156628259E069-7064
chr185662826956628440E069-6883
chr185663234756632484E069-2839
chr185663256856633008E069-2315
chr185663775656637871E0692433
chr185663804456639176E0692721
chr185663935156639395E0694028
chr185663958356639633E0694260
chr185663981456639958E0694491
chr185664195456642057E0696631
chr185664207756642260E0696754
chr185664696656647041E06911643
chr185664711156647197E06911788
chr185664722456647385E06911901
chr185666499956666508E06929676
chr185658810456588210E070-47113
chr185658826656588341E070-46982
chr185658853656588616E070-46707
chr185658883656588886E070-46437
chr185659035756590407E070-44916
chr185659059156590641E070-44682
chr185659535256595584E070-39739
chr185659559356595882E070-39441
chr185659596156596059E070-39264
chr185659633456596440E070-38883
chr185659644856596775E070-38548
chr185659691256597011E070-38312
chr185663256856633008E070-2315
chr185663759156637726E0702268
chr185663775656637871E0702433
chr185663804456639176E0702721
chr185663981456639958E0704491
chr185664061756640677E0705294
chr185666216156662232E07026838
chr185666245456662554E07027131
chr185666257256662632E07027249
chr185666263556662792E07027312
chr185666288756662937E07027564
chr185666302156664404E07027698
chr185666459156664631E07029268
chr185667441456674838E07039091
chr185667484756674907E07039524
chr185667496656675086E07039643
chr185658810456588210E071-47113
chr185658826656588341E071-46982
chr185658853656588616E071-46707
chr185658883656588886E071-46437
chr185658948956589539E071-45784
chr185658963756589687E071-45636
chr185658972556589795E071-45528
chr185658989556589971E071-45352
chr185659007056590122E071-45201
chr185659035756590407E071-44916
chr185659059156590641E071-44682
chr185659068056591078E071-44245
chr185659406656594229E071-41094
chr185659443656594587E071-40736
chr185659460256594841E071-40482
chr185659498356595243E071-40080
chr185659596156596059E071-39264
chr185659633456596440E071-38883
chr185659644856596775E071-38548
chr185659691256597011E071-38312
chr185659708656597340E071-37983
chr185659746156597567E071-37756
chr185659760756597651E071-37672
chr185659865856598788E071-36535
chr185660325256603334E071-31989
chr185660340256603595E071-31728
chr185660378056603820E071-31503
chr185660407556604223E071-31100
chr185660447456604866E071-30457
chr185660551456605554E071-29769
chr185660587156605925E071-29398
chr185661116856611250E071-24073
chr185661171056611760E071-23563
chr185661181956611915E071-23408
chr185661228556612451E071-22872
chr185661246656612517E071-22806
chr185661254356612614E071-22709
chr185662091256621555E071-13768
chr185662783356627897E071-7426
chr185662794656628054E071-7269
chr185662807156628259E071-7064
chr185662826956628440E071-6883
chr185662868456628756E071-6567
chr185663234756632484E071-2839
chr185663256856633008E071-2315
chr185663305456633507E071-1816
chr185663356556634224E071-1099
chr185663423056634389E071-934
chr185663439456634473E071-850
chr185663504256635465E0710
chr185663553556635625E071212
chr185663775656637871E0712433
chr185663804456639176E0712721
chr185663958356639633E0714260
chr185663981456639958E0714491
chr185664315756643223E0717834
chr185664322956643470E0717906
chr185664380756643862E0718484
chr185664448456644575E0719161
chr185664688156646936E07111558
chr185664696656647041E07111643
chr185664711156647197E07111788
chr185664722456647385E07111901
chr185658810456588210E072-47113
chr185658826656588341E072-46982
chr185658853656588616E072-46707
chr185658883656588886E072-46437
chr185658948956589539E072-45784
chr185658963756589687E072-45636
chr185658972556589795E072-45528
chr185658989556589971E072-45352
chr185659007056590122E072-45201
chr185659035756590407E072-44916
chr185659059156590641E072-44682
chr185659068056591078E072-44245
chr185659443656594587E072-40736
chr185659460256594841E072-40482
chr185659498356595243E072-40080
chr185659535256595584E072-39739
chr185659559356595882E072-39441
chr185659596156596059E072-39264
chr185659633456596440E072-38883
chr185659644856596775E072-38548
chr185659691256597011E072-38312
chr185659708656597340E072-37983
chr185659746156597567E072-37756
chr185659760756597651E072-37672
chr185660173656601849E072-33474
chr185660186656602013E072-33310
chr185660205656602160E072-33163
chr185660241256602858E072-32465
chr185660325256603334E072-31989
chr185660340256603595E072-31728
chr185660378056603820E072-31503
chr185660407556604223E072-31100
chr185660447456604866E072-30457
chr185661116856611250E072-24073
chr185661171056611760E072-23563
chr185661181956611915E072-23408
chr185661228556612451E072-22872
chr185661246656612517E072-22806
chr185661254356612614E072-22709
chr185662091256621555E072-13768
chr185662746356627617E072-7706
chr185662783356627897E072-7426
chr185662794656628054E072-7269
chr185662807156628259E072-7064
chr185662826956628440E072-6883
chr185663234756632484E072-2839
chr185663256856633008E072-2315
chr185663553556635625E072212
chr185663565556635837E072332
chr185663589956635964E072576
chr185663605656636096E072733
chr185663616956636368E072846
chr185663637056636682E0721047
chr185663935156639395E0724028
chr185663981456639958E0724491
chr185664448456644575E0729161
chr185664458956644773E0729266
chr185664497556645153E0729652
chr185664696656647041E07211643
chr185664711156647197E07211788
chr185664722456647385E07211901
chr185664763856647776E07212315
chr185658948956589539E073-45784
chr185658963756589687E073-45636
chr185658972556589795E073-45528
chr185658989556589971E073-45352
chr185659007056590122E073-45201
chr185659035756590407E073-44916
chr185659059156590641E073-44682
chr185659068056591078E073-44245
chr185659596156596059E073-39264
chr185659633456596440E073-38883
chr185659644856596775E073-38548
chr185659691256597011E073-38312
chr185659708656597340E073-37983
chr185660173656601849E073-33474
chr185660186656602013E073-33310
chr185660205656602160E073-33163
chr185660325256603334E073-31989
chr185660340256603595E073-31728
chr185660378056603820E073-31503
chr185660447456604866E073-30457
chr185660499356605115E073-30208
chr185660513856605249E073-30074
chr185661181956611915E073-23408
chr185661228556612451E073-22872
chr185661246656612517E073-22806
chr185662746356627617E073-7706
chr185662783356627897E073-7426
chr185662794656628054E073-7269
chr185662807156628259E073-7064
chr185662826956628440E073-6883
chr185662868456628756E073-6567
chr185662904956629138E073-6185
chr185662919456629244E073-6079
chr185663022156630363E073-4960
chr185663044056630498E073-4825
chr185663256856633008E073-2315
chr185663305456633507E073-1816
chr185663504256635465E0730
chr185663553556635625E073212
chr185663565556635837E073332
chr185663589956635964E073576
chr185663605656636096E073733
chr185663759156637726E0732268
chr185663775656637871E0732433
chr185666499956666508E07329676
chr185658963756589687E074-45636
chr185658972556589795E074-45528
chr185658989556589971E074-45352
chr185659007056590122E074-45201
chr185659035756590407E074-44916
chr185659059156590641E074-44682
chr185659068056591078E074-44245
chr185659443656594587E074-40736
chr185659460256594841E074-40482
chr185659498356595243E074-40080
chr185659535256595584E074-39739
chr185659596156596059E074-39264
chr185659633456596440E074-38883
chr185659644856596775E074-38548
chr185659691256597011E074-38312
chr185659708656597340E074-37983
chr185659865856598788E074-36535
chr185660325256603334E074-31989
chr185660340256603595E074-31728
chr185660378056603820E074-31503
chr185660407556604223E074-31100
chr185660447456604866E074-30457
chr185660499356605115E074-30208
chr185660513856605249E074-30074
chr185660528356605354E074-29969
chr185660551456605554E074-29769
chr185660587156605925E074-29398
chr185661116856611250E074-24073
chr185661171056611760E074-23563
chr185661181956611915E074-23408
chr185661228556612451E074-22872
chr185661246656612517E074-22806
chr185661254356612614E074-22709
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