rs7251868

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

ZNF225 : Intron Variant

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G==0197 (5903/29938,GnomAD)
G==0218 (6367/29118,TOPMED)
G==0298 (1493/5008,1000G)
G==0114 (441/3854,ALSPAC)
G==0119 (440/3708,TWINSUK)

Position: chr19:44124204 (GRCh38.p7) (19q13.31)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 29 Enhancers around

Promoter: 60 Promoters around

Variant Details Frequency Publications p-values eSNP meSNP

Genomic Coordinates

Sequence Name	Change(s)
GRCh38.p7 chr 19	NC_000019.10:g.44124204G>A
GRCh37.p13 chr 19	NC_000019.9:g.44628357G>A

Gene: ZNF225, zinc finger protein 225(plus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
ZNF225 transcript variant 2	NM_001321685.1:c.	N/A	Intron Variant
ZNF225 transcript variant 1	NM_013362.3:c.	N/A	Intron Variant
ZNF225 transcript variant X1	XM_011527285.2:c.	N/A	Intron Variant
ZNF225 transcript variant X2	XM_011527286.2:c.	N/A	Intron Variant
ZNF225 transcript variant X3	XM_005259223.3:c.	N/A	Genic Upstream Transcript Variant

Population Frequency

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.322	A=0.678
1000Genomes	American	Sub	694	G=0.320	A=0.680
1000Genomes	East Asian	Sub	1008	G=0.497	A=0.503
1000Genomes	Europe	Sub	1006	G=0.119	A=0.881
1000Genomes	Global	Study-wide	5008	G=0.298	A=0.702
1000Genomes	South Asian	Sub	978	G=0.230	A=0.770
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.114	A=0.886
The Genome Aggregation Database	African	Sub	8712	G=0.283	A=0.717
The Genome Aggregation Database	American	Sub	836	G=0.350	A=0.650
The Genome Aggregation Database	East Asian	Sub	1614	G=0.456	A=0.544
The Genome Aggregation Database	Europe	Sub	18474	G=0.128	A=0.871
The Genome Aggregation Database	Global	Study-wide	29938	G=0.197	A=0.802
The Genome Aggregation Database	Other	Sub	302	G=0.130	A=0.870
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.218	A=0.781
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.119	A=0.881

PMID	Title	Author	Journal
23743675	A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.	Kapoor M	Hum Genet

P-Value

SNP ID	p-value	Traits	Study
rs7251868	0.000215	alcohol consumption	23743675

eQTL of rs7251868 in Brain tissues (GTEx Analysis Release V7)

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

meQTL of rs7251868 in Fetal Brain

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr19	44670758	44670818	E067	42401
chr19	44670933	44671011	E067	42576
chr19	44671049	44671115	E067	42692
chr19	44618883	44619034	E068	-9323
chr19	44670758	44670818	E068	42401
chr19	44670933	44671011	E068	42576
chr19	44600148	44600194	E069	-28163
chr19	44600148	44600194	E070	-28163
chr19	44618883	44619034	E070	-9323
chr19	44619037	44619091	E070	-9266
chr19	44619125	44619165	E070	-9192
chr19	44670758	44670818	E070	42401
chr19	44670933	44671011	E070	42576
chr19	44671049	44671115	E070	42692
chr19	44671876	44671938	E070	43519
chr19	44618883	44619034	E071	-9323
chr19	44670758	44670818	E071	42401
chr19	44670758	44670818	E072	42401
chr19	44670933	44671011	E072	42576
chr19	44670758	44670818	E074	42401
chr19	44670933	44671011	E074	42576
chr19	44671876	44671938	E074	43519
chr19	44670758	44670818	E081	42401
chr19	44670933	44671011	E081	42576
chr19	44671049	44671115	E081	42692
chr19	44671876	44671938	E081	43519
chr19	44600816	44600930	E082	-27427
chr19	44670933	44671011	E082	42576
chr19	44671049	44671115	E082	42692

Promoter Annotation (GRCh37.p13)

Chromosome	Start	End	Region	Distance(-/+:Up/Downstream)
chr19	44598047	44599722	E067	-28635
chr19	44615925	44616789	E067	-11568
chr19	44616806	44618482	E067	-9875
chr19	44644881	44646741	E067	16524
chr19	44668498	44670041	E067	40141
chr19	44597812	44597885	E068	-30472
chr19	44597935	44597989	E068	-30368
chr19	44598047	44599722	E068	-28635
chr19	44615787	44615827	E068	-12530
chr19	44615925	44616789	E068	-11568
chr19	44616806	44618482	E068	-9875
chr19	44644743	44644803	E068	16386
chr19	44644881	44646741	E068	16524
chr19	44668498	44670041	E068	40141
chr19	44598047	44599722	E069	-28635
chr19	44615787	44615827	E069	-12530
chr19	44615925	44616789	E069	-11568
chr19	44616806	44618482	E069	-9875
chr19	44644881	44646741	E069	16524
chr19	44668498	44670041	E069	40141
chr19	44598047	44599722	E070	-28635
chr19	44615925	44616789	E070	-11568
chr19	44616806	44618482	E070	-9875
chr19	44644743	44644803	E070	16386
chr19	44644881	44646741	E070	16524
chr19	44668498	44670041	E070	40141
chr19	44598047	44599722	E071	-28635
chr19	44615787	44615827	E071	-12530
chr19	44615925	44616789	E071	-11568
chr19	44616806	44618482	E071	-9875
chr19	44644743	44644803	E071	16386
chr19	44644881	44646741	E071	16524
chr19	44668498	44670041	E071	40141
chr19	44598047	44599722	E072	-28635
chr19	44615925	44616789	E072	-11568
chr19	44616806	44618482	E072	-9875
chr19	44644743	44644803	E072	16386
chr19	44644881	44646741	E072	16524
chr19	44668498	44670041	E072	40141
chr19	44598047	44599722	E073	-28635
chr19	44615925	44616789	E073	-11568
chr19	44616806	44618482	E073	-9875
chr19	44644881	44646741	E073	16524
chr19	44668498	44670041	E073	40141
chr19	44598047	44599722	E074	-28635
chr19	44615925	44616789	E074	-11568
chr19	44616806	44618482	E074	-9875
chr19	44644881	44646741	E074	16524
chr19	44668498	44670041	E074	40141
chr19	44598047	44599722	E081	-28635
chr19	44615925	44616789	E081	-11568
chr19	44616806	44618482	E081	-9875
chr19	44644881	44646741	E081	16524
chr19	44668498	44670041	E081	40141
chr19	44598047	44599722	E082	-28635
chr19	44615925	44616789	E082	-11568
chr19	44616806	44618482	E082	-9875
chr19	44644743	44644803	E082	16386
chr19	44644881	44646741	E082	16524
chr19	44668498	44670041	E082	40141