Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 2 | NC_000002.12:g.119266116G>C |
GRCh37.p13 chr 2 | NC_000002.11:g.120023692G>C |
STEAP3 RefSeqGene | NG_042823.1:g.47309G>C |
Molecule type | Change | Amino acid[Codon] | SO Term |
---|---|---|---|
STEAP3 transcript variant 3 | NM_001008410.1:c. | N/A | Downstream Transcript Variant |
STEAP3 transcript variant 2 | NM_018234.2:c. | N/A | Downstream Transcript Variant |
STEAP3 transcript variant 4 | NM_138637.2:c. | N/A | Downstream Transcript Variant |
STEAP3 transcript variant 1 | NM_182915.2:c. | N/A | Downstream Transcript Variant |
STEAP3 transcript variant X2 | XM_006712614.3:c. | N/A | Downstream Transcript Variant |
STEAP3 transcript variant X3 | XM_006712615.1:c. | N/A | Downstream Transcript Variant |
STEAP3 transcript variant X1 | XM_011511403.1:c. | N/A | Downstream Transcript Variant |
Molecule type | Change | Amino acid[Codon] | SO Term |
---|---|---|---|
LOC105373581 transcript | XR_001739666.1:n....XR_001739666.1:n.4110C>G | C>G | Non Coding Transcript Variant |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | G=0.992 | C=0.008 |
1000Genomes | American | Sub | 694 | G=0.980 | C=0.020 |
1000Genomes | East Asian | Sub | 1008 | G=0.985 | C=0.015 |
1000Genomes | Europe | Sub | 1006 | G=0.959 | C=0.041 |
1000Genomes | Global | Study-wide | 5008 | G=0.966 | C=0.034 |
1000Genomes | South Asian | Sub | 978 | G=0.910 | C=0.090 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | G=0.951 | C=0.049 |
The Genome Aggregation Database | African | Sub | 8718 | G=0.985 | C=0.015 |
The Genome Aggregation Database | American | Sub | 838 | G=0.990 | C=0.010 |
The Genome Aggregation Database | East Asian | Sub | 1622 | G=0.996 | C=0.004 |
The Genome Aggregation Database | Europe | Sub | 18464 | G=0.968 | C=0.031 |
The Genome Aggregation Database | Global | Study-wide | 29944 | G=0.974 | C=0.025 |
The Genome Aggregation Database | Other | Sub | 302 | G=0.920 | C=0.080 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29116 | G=0.970 | C=0.029 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | G=0.951 | C=0.049 |
PMID | Title | Author | Journal |
---|---|---|---|
23958962 | Genome-wide association study of cocaine dependence and related traits: FAM53B identified as a risk gene. | Gelernter J | Mol Psychiatry |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs72840936 | 3E-06 | cocaine dependence | 23958962 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr2 | 119987951 | 119988031 | E067 | -35661 |
chr2 | 119988281 | 119988629 | E067 | -35063 |
chr2 | 119988647 | 119988858 | E067 | -34834 |
chr2 | 119997988 | 119998714 | E067 | -24978 |
chr2 | 120016741 | 120017409 | E067 | -6283 |
chr2 | 120033851 | 120033910 | E067 | 10159 |
chr2 | 120039877 | 120040015 | E067 | 16185 |
chr2 | 120040063 | 120040126 | E067 | 16371 |
chr2 | 120040327 | 120040587 | E067 | 16635 |
chr2 | 120040649 | 120040757 | E067 | 16957 |
chr2 | 120040795 | 120040979 | E067 | 17103 |
chr2 | 120041318 | 120041395 | E067 | 17626 |
chr2 | 119987346 | 119987925 | E068 | -35767 |
chr2 | 119987951 | 119988031 | E068 | -35661 |
chr2 | 119988281 | 119988629 | E068 | -35063 |
chr2 | 119997988 | 119998714 | E068 | -24978 |
chr2 | 120010177 | 120011230 | E068 | -12462 |
chr2 | 120016741 | 120017409 | E068 | -6283 |
chr2 | 120034540 | 120034612 | E068 | 10848 |
chr2 | 120034646 | 120034721 | E068 | 10954 |
chr2 | 120039877 | 120040015 | E068 | 16185 |
chr2 | 120040063 | 120040126 | E068 | 16371 |
chr2 | 120040327 | 120040587 | E068 | 16635 |
chr2 | 120040649 | 120040757 | E068 | 16957 |
chr2 | 120040795 | 120040979 | E068 | 17103 |
chr2 | 120041318 | 120041395 | E068 | 17626 |
chr2 | 120046606 | 120046703 | E068 | 22914 |
chr2 | 120046813 | 120046944 | E068 | 23121 |
chr2 | 120072965 | 120073141 | E068 | 49273 |
chr2 | 120073207 | 120073332 | E068 | 49515 |
chr2 | 119997988 | 119998714 | E069 | -24978 |
chr2 | 120013127 | 120013337 | E069 | -10355 |
chr2 | 120013343 | 120013872 | E069 | -9820 |
chr2 | 120016741 | 120017409 | E069 | -6283 |
chr2 | 120039877 | 120040015 | E069 | 16185 |
chr2 | 120040063 | 120040126 | E069 | 16371 |
chr2 | 120040327 | 120040587 | E069 | 16635 |
chr2 | 120041318 | 120041395 | E069 | 17626 |
chr2 | 120041427 | 120041983 | E069 | 17735 |
chr2 | 120049699 | 120049887 | E069 | 26007 |
chr2 | 119987346 | 119987925 | E070 | -35767 |
chr2 | 119987951 | 119988031 | E070 | -35661 |
chr2 | 120012911 | 120012961 | E070 | -10731 |
chr2 | 120013127 | 120013337 | E070 | -10355 |
chr2 | 120013343 | 120013872 | E070 | -9820 |
chr2 | 120014076 | 120014412 | E070 | -9280 |
chr2 | 120014897 | 120015074 | E070 | -8618 |
chr2 | 120015872 | 120016015 | E070 | -7677 |
chr2 | 120018386 | 120018474 | E070 | -5218 |
chr2 | 120018652 | 120018748 | E070 | -4944 |
chr2 | 120018789 | 120018880 | E070 | -4812 |
chr2 | 120018973 | 120019067 | E070 | -4625 |
chr2 | 120033851 | 120033910 | E070 | 10159 |
chr2 | 120039877 | 120040015 | E070 | 16185 |
chr2 | 120040063 | 120040126 | E070 | 16371 |
chr2 | 120040327 | 120040587 | E070 | 16635 |
chr2 | 120040649 | 120040757 | E070 | 16957 |
chr2 | 120040795 | 120040979 | E070 | 17103 |
chr2 | 120041318 | 120041395 | E070 | 17626 |
chr2 | 120041427 | 120041983 | E070 | 17735 |
chr2 | 120048514 | 120048775 | E070 | 24822 |
chr2 | 119982730 | 119982964 | E071 | -40728 |
chr2 | 119983142 | 119983431 | E071 | -40261 |
chr2 | 119987346 | 119987925 | E071 | -35767 |
chr2 | 119988281 | 119988629 | E071 | -35063 |
chr2 | 119997988 | 119998714 | E071 | -24978 |
chr2 | 120013127 | 120013337 | E071 | -10355 |
chr2 | 120013343 | 120013872 | E071 | -9820 |
chr2 | 120013977 | 120014066 | E071 | -9626 |
chr2 | 120014076 | 120014412 | E071 | -9280 |
chr2 | 120016741 | 120017409 | E071 | -6283 |
chr2 | 120039877 | 120040015 | E071 | 16185 |
chr2 | 120040063 | 120040126 | E071 | 16371 |
chr2 | 120040327 | 120040587 | E071 | 16635 |
chr2 | 120040649 | 120040757 | E071 | 16957 |
chr2 | 120040795 | 120040979 | E071 | 17103 |
chr2 | 120041318 | 120041395 | E071 | 17626 |
chr2 | 120049699 | 120049887 | E071 | 26007 |
chr2 | 119987346 | 119987925 | E072 | -35767 |
chr2 | 119987951 | 119988031 | E072 | -35661 |
chr2 | 119988281 | 119988629 | E072 | -35063 |
chr2 | 119997988 | 119998714 | E072 | -24978 |
chr2 | 120013343 | 120013872 | E072 | -9820 |
chr2 | 120016741 | 120017409 | E072 | -6283 |
chr2 | 120040327 | 120040587 | E072 | 16635 |
chr2 | 120040649 | 120040757 | E072 | 16957 |
chr2 | 120040795 | 120040979 | E072 | 17103 |
chr2 | 120041318 | 120041395 | E072 | 17626 |
chr2 | 120046606 | 120046703 | E072 | 22914 |
chr2 | 120046813 | 120046944 | E072 | 23121 |
chr2 | 120047371 | 120047440 | E072 | 23679 |
chr2 | 120049699 | 120049887 | E072 | 26007 |
chr2 | 119982730 | 119982964 | E073 | -40728 |
chr2 | 119997988 | 119998714 | E073 | -24978 |
chr2 | 120016741 | 120017409 | E073 | -6283 |
chr2 | 120039877 | 120040015 | E073 | 16185 |
chr2 | 120040063 | 120040126 | E073 | 16371 |
chr2 | 120040327 | 120040587 | E073 | 16635 |
chr2 | 120041318 | 120041395 | E073 | 17626 |
chr2 | 120049699 | 120049887 | E073 | 26007 |
chr2 | 119987346 | 119987925 | E074 | -35767 |
chr2 | 119987951 | 119988031 | E074 | -35661 |
chr2 | 119997988 | 119998714 | E074 | -24978 |
chr2 | 120016741 | 120017409 | E074 | -6283 |
chr2 | 120039877 | 120040015 | E074 | 16185 |
chr2 | 120040063 | 120040126 | E074 | 16371 |
chr2 | 120041318 | 120041395 | E074 | 17626 |
chr2 | 119997988 | 119998714 | E081 | -24978 |
chr2 | 120013343 | 120013872 | E081 | -9820 |
chr2 | 120014076 | 120014412 | E081 | -9280 |
chr2 | 120040327 | 120040587 | E081 | 16635 |
chr2 | 120040649 | 120040757 | E081 | 16957 |
chr2 | 120040795 | 120040979 | E081 | 17103 |
chr2 | 119997988 | 119998714 | E082 | -24978 |
chr2 | 120018652 | 120018748 | E082 | -4944 |
Chromosome | Start | End | Region | Distance(-/+:Up/Downstream) |
---|---|---|---|---|
chr2 | 119981032 | 119981723 | E067 | -41969 |
chr2 | 119981782 | 119981894 | E067 | -41798 |
chr2 | 119982036 | 119982187 | E067 | -41505 |
chr2 | 119981032 | 119981723 | E068 | -41969 |
chr2 | 119981782 | 119981894 | E068 | -41798 |
chr2 | 119982036 | 119982187 | E068 | -41505 |
chr2 | 120063936 | 120064002 | E068 | 40244 |
chr2 | 120064359 | 120064469 | E068 | 40667 |
chr2 | 120064534 | 120064613 | E068 | 40842 |
chr2 | 119981032 | 119981723 | E069 | -41969 |
chr2 | 119981782 | 119981894 | E069 | -41798 |
chr2 | 119981032 | 119981723 | E070 | -41969 |
chr2 | 119981032 | 119981723 | E071 | -41969 |
chr2 | 120063936 | 120064002 | E071 | 40244 |
chr2 | 119981032 | 119981723 | E072 | -41969 |
chr2 | 120063936 | 120064002 | E072 | 40244 |
chr2 | 120064359 | 120064469 | E072 | 40667 |
chr2 | 120064534 | 120064613 | E072 | 40842 |
chr2 | 119981032 | 119981723 | E073 | -41969 |
chr2 | 119981782 | 119981894 | E073 | -41798 |
chr2 | 119982036 | 119982187 | E073 | -41505 |
chr2 | 119981032 | 119981723 | E074 | -41969 |
chr2 | 119981782 | 119981894 | E074 | -41798 |
chr2 | 119982036 | 119982187 | E074 | -41505 |
chr2 | 119981032 | 119981723 | E082 | -41969 |
chr2 | 119981782 | 119981894 | E082 | -41798 |