rs7303401

Homo sapiens
T>A
None
Check p-value
SNV (Single Nucleotide Variation)
A=0129 (3773/29240,GnomAD)
A=0183 (5329/29118,TOPMED)
A=0145 (725/5008,1000G)
A=0111 (427/3854,ALSPAC)
A=0109 (404/3708,TWINSUK)
chr12:120966253 (GRCh38.p7) (12q24.31)
AD
GWASdb2
1   publication(s)
See rs on genome
21 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 12NC_000012.12:g.120966253T>A
GRCh37.p13 chr 12NC_000012.11:g.121404056T>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.741A=0.259
1000GenomesAmericanSub694T=0.690A=0.310
1000GenomesEast AsianSub1008T=1.000A=0.000
1000GenomesEuropeSub1006T=0.896A=0.104
1000GenomesGlobalStudy-wide5008T=0.855A=0.145
1000GenomesSouth AsianSub978T=0.940A=0.060
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.889A=0.111
The Genome Aggregation DatabaseAfricanSub8510T=0.761A=0.239
The Genome Aggregation DatabaseAmericanSub822T=0.710A=0.290
The Genome Aggregation DatabaseEast AsianSub1602T=1.000A=0.000
The Genome Aggregation DatabaseEuropeSub18006T=0.918A=0.081
The Genome Aggregation DatabaseGlobalStudy-wide29240T=0.871A=0.129
The Genome Aggregation DatabaseOtherSub300T=0.910A=0.090
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.817A=0.183
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.891A=0.109
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs73034010.000148alcohol dependence21314694

eQTL of rs7303401 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs7303401 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr12121436621121436738E06732565
chr12121452955121453060E06748899
chr12121453089121453262E06749033
chr12121453301121453383E06749245
chr12121452955121453060E06848899
chr12121453089121453262E06849033
chr12121453301121453383E06849245
chr12121452955121453060E06948899
chr12121453089121453262E06949033
chr12121453301121453383E06949245
chr12121453089121453262E07049033
chr12121453089121453262E07149033
chr12121453301121453383E07149245
chr12121453089121453262E07249033
chr12121453301121453383E07249245
chr12121452955121453060E07448899
chr12121453089121453262E07449033
chr12121453301121453383E07449245
chr12121452955121453060E08148899
chr12121453089121453262E08149033
chr12121453301121453383E08149245