rs7317775

Homo sapiens
T>A
LHFP : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
A=0233 (6989/29894,GnomAD)
A=0233 (6811/29116,TOPMED)
A=0265 (1329/5008,1000G)
A=0190 (731/3854,ALSPAC)
A=0206 (763/3708,TWINSUK)
chr13:39440781 (GRCh38.p7) (13q13.3)
AD
GWASdb2
1   publication(s)
See rs on genome
159 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 13NC_000013.11:g.39440781T>A
GRCh37.p13 chr 13NC_000013.10:g.40014918T>A

Gene: LHFP, lipoma HMGIC fusion partner(minus strand)

Molecule type Change Amino acid[Codon] SO Term
LHFPL6 transcriptNM_005780.2:c.N/AIntron Variant
LHFPL6 transcript variant X1XM_011534861.1:c.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.774A=0.226
1000GenomesAmericanSub694T=0.810A=0.190
1000GenomesEast AsianSub1008T=0.475A=0.525
1000GenomesEuropeSub1006T=0.757A=0.243
1000GenomesGlobalStudy-wide5008T=0.735A=0.265
1000GenomesSouth AsianSub978T=0.870A=0.130
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.810A=0.190
The Genome Aggregation DatabaseAfricanSub8696T=0.770A=0.230
The Genome Aggregation DatabaseAmericanSub836T=0.820A=0.180
The Genome Aggregation DatabaseEast AsianSub1614T=0.482A=0.518
The Genome Aggregation DatabaseEuropeSub18446T=0.786A=0.213
The Genome Aggregation DatabaseGlobalStudy-wide29894T=0.766A=0.233
The Genome Aggregation DatabaseOtherSub302T=0.780A=0.220
Trans-Omics for Precision MedicineGlobalStudy-wide29116T=0.766A=0.233
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.794A=0.206
PMID Title Author Journal
23743675A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.Kapoor MHum Genet

P-Value

SNP ID p-value Traits Study
rs73177755.6E-05alcohol consumption23743675

eQTL of rs7317775 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs7317775 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr133997934039979491E067-35427
chr133997959739980114E067-34804
chr133998316939983334E067-31584
chr133998364239983764E067-31154
chr133998398439984048E067-30870
chr133998405039985044E067-29874
chr133999028339990382E067-24536
chr133999040939990485E067-24433
chr133999059139990636E067-24282
chr133999076939990856E067-24062
chr133999088639991071E067-23847
chr133999414939994333E067-20585
chr134002266940023442E0677751
chr134002354940023642E0678631
chr134005777440058082E06742856
chr134005818540058405E06743267
chr133996887839970009E068-44909
chr133998364239983764E068-31154
chr133998398439984048E068-30870
chr133998405039985044E068-29874
chr133998518439985281E068-29637
chr133998562539985903E068-29015
chr133998595639986014E068-28904
chr133998851139990009E068-24909
chr133999004139990091E068-24827
chr133999028339990382E068-24536
chr133999040939990485E068-24433
chr133999059139990636E068-24282
chr133999076939990856E068-24062
chr133999088639991071E068-23847
chr133999292039993082E068-21836
chr133999322339993570E068-21348
chr133999361839993668E068-21250
chr133999374339993801E068-21117
chr133999400039994044E068-20874
chr133999414939994333E068-20585
chr134002266940023442E0687751
chr134002530640027327E06810388
chr134002753040027580E06812612
chr134005564340055693E06840725
chr134005777440058082E06842856
chr134005818540058405E06843267
chr134005845840058539E06843540
chr134005864840059074E06843730
chr133996887839970009E069-44909
chr133997959739980114E069-34804
chr133998132439981661E069-33257
chr133998206139982412E069-32506
chr133998242739982627E069-32291
chr133998364239983764E069-31154
chr133998398439984048E069-30870
chr133998405039985044E069-29874
chr133998851139990009E069-24909
chr133999004139990091E069-24827
chr133999028339990382E069-24536
chr133999040939990485E069-24433
chr133999059139990636E069-24282
chr133999076939990856E069-24062
chr133999088639991071E069-23847
chr134002266940023442E0697751
chr134002354940023642E0698631
chr134002382340023932E0698905
chr134002459840024681E0699680
chr134002530640027327E06910388
chr134003444040034499E06919522
chr133996887839970009E070-44909
chr133999115139992277E070-22641
chr134002530640027327E07010388
chr134002753040027580E07012612
chr134002762740027667E07012709
chr134002772040028110E07012802
chr134006401140064876E07049093
chr133996887839970009E071-44909
chr133998364239983764E071-31154
chr133998398439984048E071-30870
chr133998405039985044E071-29874
chr133998851139990009E071-24909
chr133999004139990091E071-24827
chr133999028339990382E071-24536
chr133999040939990485E071-24433
chr133999059139990636E071-24282
chr133999076939990856E071-24062
chr133999088639991071E071-23847
chr133999115139992277E071-22641
chr133999237239992432E071-22486
chr133999256439992886E071-22032
chr133999292039993082E071-21836
chr133999322339993570E071-21348
chr134002215440022216E0717236
chr134002266940023442E0717751
chr134002422940024276E0719311
chr134002443740024523E0719519
chr134002459840024681E0719680
chr134002530640027327E07110388
chr134002753040027580E07112612
chr134002762740027667E07112709
chr134002772040028110E07112802
chr133996887839970009E072-44909
chr133997518839976222E072-38696
chr133999004139990091E072-24827
chr134002266940023442E0727751
chr133996887839970009E073-44909
chr133997518839976222E073-38696
chr133998398439984048E073-30870
chr133998405039985044E073-29874
chr133999028339990382E073-24536
chr133999040939990485E073-24433
chr133999059139990636E073-24282
chr133999076939990856E073-24062
chr133999088639991071E073-23847
chr134002093740020997E0736019
chr134002123740021298E0736319
chr134002154940021633E0736631
chr134002168340021747E0736765
chr134003423840034335E07319320
chr134003511440035154E07320196
chr134005777440058082E07342856
chr134005818540058405E07343267
chr134005845840058539E07343540
chr133996775239967802E074-47116
chr133996789739967968E074-46950
chr133996887839970009E074-44909
chr133998091039981204E074-33714
chr133998132439981661E074-33257
chr133998206139982412E074-32506
chr133998242739982627E074-32291
chr133998263739982903E074-32015
chr133998398439984048E074-30870
chr133998405039985044E074-29874
chr133998796239988002E074-26916
chr133998820639988344E074-26574
chr133998851139990009E074-24909
chr133999028339990382E074-24536
chr133999040939990485E074-24433
chr133999059139990636E074-24282
chr133999076939990856E074-24062
chr133999088639991071E074-23847
chr133999115139992277E074-22641
chr133999237239992432E074-22486
chr133999256439992886E074-22032
chr133999292039993082E074-21836
chr133999322339993570E074-21348
chr134002266940023442E0747751
chr134002354940023642E0748631
chr134002530640027327E07410388
chr134002952240029634E07414604
chr134002972540030266E07414807
chr134003480040034854E07419882
chr133996887839970009E081-44909
chr133999115139992277E081-22641
chr134001988540020125E0814967
chr134002020440020367E0815286
chr133996887839970009E082-44909
chr133997518839976222E082-38696
chr133997934039979491E082-35427
chr133997959739980114E082-34804
chr134001988540020125E0824967
chr134002020440020367E0825286
chr134004966340049876E08234745