SNP Detail Info-rs7328552

Organism: Homo sapiens

Alleles: G>T

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

T=0144 (4307/29864,GnomAD)
T=0182 (5304/29118,TOPMED)
T=0144 (722/5008,1000G)
T=0106 (407/3854,ALSPAC)
T=0102 (378/3708,TWINSUK)

Position: chr13:87055687 (GRCh38.p7) (13q31.1)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 13	NC_000013.11:g.87055687G>T
GRCh37.p13 chr 13	NC_000013.10:g.87707942G>T

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.672	T=0.328
1000Genomes	American	Sub	694	G=0.910	T=0.090
1000Genomes	East Asian	Sub	1008	G=0.970	T=0.030
1000Genomes	Europe	Sub	1006	G=0.906	T=0.094
1000Genomes	Global	Study-wide	5008	G=0.856	T=0.144
1000Genomes	South Asian	Sub	978	G=0.900	T=0.100
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.894	T=0.106
The Genome Aggregation Database	African	Sub	8700	G=0.708	T=0.292
The Genome Aggregation Database	American	Sub	828	G=0.930	T=0.070
The Genome Aggregation Database	East Asian	Sub	1618	G=0.955	T=0.045
The Genome Aggregation Database	Europe	Sub	18418	G=0.913	T=0.086
The Genome Aggregation Database	Global	Study-wide	29864	G=0.855	T=0.144
The Genome Aggregation Database	Other	Sub	300	G=0.840	T=0.160
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.817	T=0.182
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.898	T=0.102

PMID	Title	Author	Journal
23743675	A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.	Kapoor M	Hum Genet

SNP ID	p-value	Traits	Study
rs7328552	0.000115	alcohol consumption	23743675

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
Chr13:87707942	SLITRK5	ENSG00000165300.6	G>T	7.2166e-3	-616928	Cerebellar_Hemisphere

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs7328552