rs7336505

Homo sapiens
T>C
LINC00383 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
T==0312 (9141/29272,GnomAD)
T==0283 (8263/29116,TOPMED)
T==0322 (1611/5008,1000G)
T==0338 (1302/3854,ALSPAC)
T==0331 (1227/3708,TWINSUK)
chr13:69281476 (GRCh38.p7) (13q21.33)
ND
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 13NC_000013.11:g.69281476T>C
GRCh37.p13 chr 13NC_000013.10:g.69855608T>C

Gene: LINC00383, long intergenic non-protein coding RNA 383(plus strand)

Molecule type Change Amino acid[Codon] SO Term
LINC00383 transcriptNR_125752.1:n.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.210C=0.790
1000GenomesAmericanSub694T=0.450C=0.550
1000GenomesEast AsianSub1008T=0.363C=0.637
1000GenomesEuropeSub1006T=0.282C=0.718
1000GenomesGlobalStudy-wide5008T=0.322C=0.678
1000GenomesSouth AsianSub978T=0.380C=0.620
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.338C=0.662
The Genome Aggregation DatabaseAfricanSub8500T=0.228C=0.772
The Genome Aggregation DatabaseAmericanSub792T=0.470C=0.530
The Genome Aggregation DatabaseEast AsianSub1524T=0.387C=0.613
The Genome Aggregation DatabaseEuropeSub18156T=0.339C=0.660
The Genome Aggregation DatabaseGlobalStudy-wide29272T=0.312C=0.687
The Genome Aggregation DatabaseOtherSub300T=0.250C=0.750
Trans-Omics for Precision MedicineGlobalStudy-wide29116T=0.283C=0.716
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.331C=0.669
PMID Title Author Journal
17158188Novel genes identified in a high-density genome wide association study for nicotine dependence.Bierut LJHum Mol Genet

P-Value

SNP ID p-value Traits Study
rs73365057.92E-05nicotine dependence17158188

eQTL of rs7336505 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs7336505 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.