rs7338789

Homo sapiens
T>A / T>C
LOC105370217 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
A=0185 (5565/29928,GnomAD)
A=0176 (5138/29118,TOPMED)
A=0201 (1006/5008,1000G)
chr13:57459659 (GRCh38.p7) (13q21.1)
AD
GWASdb2
1   publication(s)
See rs on genome
8 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 13NC_000013.11:g.57459659T>A
GRCh38.p7 chr 13NC_000013.11:g.57459659T>C
GRCh37.p13 chr 13NC_000013.10:g.58033793T>A
GRCh37.p13 chr 13NC_000013.10:g.58033793T>C

Gene: LOC105370217, uncharacterized LOC105370217(minus strand)

Molecule type Change Amino acid[Codon] SO Term
LOC105370217 transcriptXR_941983.1:n.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.815A=0.185
1000GenomesAmericanSub694T=0.930A=0.070
1000GenomesEast AsianSub1008T=0.616A=0.384
1000GenomesEuropeSub1006T=0.819A=0.181
1000GenomesGlobalStudy-wide5008T=0.799A=0.201
1000GenomesSouth AsianSub978T=0.850A=0.150
The Genome Aggregation DatabaseAfricanSub8698T=0.834C=0.000
The Genome Aggregation DatabaseAmericanSub838T=0.910C=0.00,
The Genome Aggregation DatabaseEast AsianSub1610T=0.663C=0.000
The Genome Aggregation DatabaseEuropeSub18480T=0.812C=0.000
The Genome Aggregation DatabaseGlobalStudy-wide29928T=0.814C=0.000
The Genome Aggregation DatabaseOtherSub302T=0.850C=0.00,
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.823A=0.176
PMID Title Author Journal
24962325Genome-wide survival analysis of age at onset of alcohol dependence in extended high-risk COGA families.Kapoor MDrug Alcohol Depend

P-Value

SNP ID p-value Traits Study
rs73387895.22E-06alcohol dependence (age at onset)24962325

eQTL of rs7338789 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs7338789 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr135798386657984000E067-49551
chr135798386657984000E069-49551
chr135798386657984000E071-49551
chr135798386657984000E072-49551
chr135798386657984000E073-49551
chr135798386657984000E074-49551
chr135802517758025303E081-8248
chr135806669158066859E08133140