SNP Detail Info-rs73651015

Organism: Homo sapiens

Alleles: A>C

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

C=0011 (333/30000,GnomAD)
C=0016 (473/29118,TOPMED)
C=0015 (74/5008,1000G)
C=0000 (1/3854,ALSPAC)
C=0000 (1/3708,TWINSUK)

Position: chr9:82949359 (GRCh38.p7) (9q21.32)

Phenotype: CD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 7 Enhancers around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 9	NC_000009.12:g.82949359A>C
GRCh37.p13 chr 9	NC_000009.11:g.85564274A>C

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.948	C=0.052
1000Genomes	American	Sub	694	A=1.000	C=0.000
1000Genomes	East Asian	Sub	1008	A=1.000	C=0.000
1000Genomes	Europe	Sub	1006	A=0.998	C=0.002
1000Genomes	Global	Study-wide	5008	A=0.985	C=0.015
1000Genomes	South Asian	Sub	978	A=1.000	C=0.000
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=1.000	C=0.000
The Genome Aggregation Database	African	Sub	8732	A=0.962	C=0.038
The Genome Aggregation Database	American	Sub	838	A=1.000	C=0.000
The Genome Aggregation Database	East Asian	Sub	1622	A=1.000	C=0.000
The Genome Aggregation Database	Europe	Sub	18506	A=0.999	C=0.000
The Genome Aggregation Database	Global	Study-wide	30000	A=0.988	C=0.011
The Genome Aggregation Database	Other	Sub	302	A=1.000	C=0.000
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.983	C=0.016
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=1.000	C=0.000

PMID	Title	Author	Journal
23958962	Genome-wide association study of cocaine dependence and related traits: FAM53B identified as a risk gene.	Gelernter J	Mol Psychiatry

SNP ID	p-value	Traits	Study
rs73651015	7.27E-05	cocaine dependence	23958962

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr9	85576136	85576970	E069	11862
chr9	85576136	85576970	E071	11862
chr9	85606577	85606910	E072	42303
chr9	85606577	85606910	E074	42303
chr9	85612012	85612105	E081	47738
chr9	85613437	85613594	E081	49163
chr9	85572565	85572755	E082	8291

rs73651015