Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 5 | NC_000005.10:g.178185033G>T |
GRCh37.p13 chr 5 | NC_000005.9:g.177612034G>T |
Molecule type | Change | Amino acid[Codon] | SO Term |
---|---|---|---|
Non-protein-coding transcripts | NR_003281.1:n.240...NR_003281.1:n.2400C>A | C>A | Non Coding Transcript Variant |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | G=0.467 | T=0.533 |
1000Genomes | American | Sub | 694 | G=0.150 | T=0.850 |
1000Genomes | East Asian | Sub | 1008 | G=0.022 | T=0.978 |
1000Genomes | Europe | Sub | 1006 | G=0.127 | T=0.873 |
1000Genomes | Global | Study-wide | 5008 | G=0.188 | T=0.812 |
1000Genomes | South Asian | Sub | 978 | G=0.070 | T=0.930 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | G=0.145 | T=0.855 |
The Genome Aggregation Database | African | Sub | 8708 | G=0.437 | T=0.563 |
The Genome Aggregation Database | American | Sub | 838 | G=0.120 | T=0.880 |
The Genome Aggregation Database | East Asian | Sub | 1616 | G=0.002 | T=0.998 |
The Genome Aggregation Database | Europe | Sub | 18474 | G=0.146 | T=0.853 |
The Genome Aggregation Database | Global | Study-wide | 29938 | G=0.222 | T=0.777 |
The Genome Aggregation Database | Other | Sub | 302 | G=0.100 | T=0.900 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | G=0.259 | T=0.740 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | G=0.142 | T=0.858 |
PMID | Title | Author | Journal |
---|---|---|---|
21703634 | A meta-analysis of two genome-wide association studies identifies 3 new loci for alcohol dependence. | Wang KS | J Psychiatr Res |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs7380658 | 4.85E-05 | alcohol dependence | 21703634 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr5 | 177578833 | 177578896 | E067 | -33138 |
chr5 | 177579529 | 177579619 | E067 | -32415 |
chr5 | 177633799 | 177634006 | E067 | 21765 |
chr5 | 177656761 | 177656845 | E067 | 44727 |
chr5 | 177656884 | 177656946 | E067 | 44850 |
chr5 | 177657023 | 177657131 | E067 | 44989 |
chr5 | 177657264 | 177657318 | E067 | 45230 |
chr5 | 177657405 | 177657459 | E067 | 45371 |
chr5 | 177657660 | 177657762 | E067 | 45626 |
chr5 | 177578395 | 177578494 | E068 | -33540 |
chr5 | 177578551 | 177578723 | E068 | -33311 |
chr5 | 177578833 | 177578896 | E068 | -33138 |
chr5 | 177579529 | 177579619 | E068 | -32415 |
chr5 | 177633799 | 177634006 | E068 | 21765 |
chr5 | 177634057 | 177634818 | E068 | 22023 |
chr5 | 177634826 | 177634972 | E068 | 22792 |
chr5 | 177657660 | 177657762 | E068 | 45626 |
chr5 | 177579529 | 177579619 | E069 | -32415 |
chr5 | 177633799 | 177634006 | E069 | 21765 |
chr5 | 177634057 | 177634818 | E069 | 22023 |
chr5 | 177656761 | 177656845 | E069 | 44727 |
chr5 | 177656884 | 177656946 | E069 | 44850 |
chr5 | 177657023 | 177657131 | E069 | 44989 |
chr5 | 177657264 | 177657318 | E069 | 45230 |
chr5 | 177657405 | 177657459 | E069 | 45371 |
chr5 | 177657660 | 177657762 | E069 | 45626 |
chr5 | 177578551 | 177578723 | E070 | -33311 |
chr5 | 177578833 | 177578896 | E070 | -33138 |
chr5 | 177634826 | 177634972 | E070 | 22792 |
chr5 | 177635074 | 177635315 | E070 | 23040 |
chr5 | 177637079 | 177637188 | E070 | 25045 |
chr5 | 177657023 | 177657131 | E070 | 44989 |
chr5 | 177657264 | 177657318 | E070 | 45230 |
chr5 | 177657405 | 177657459 | E070 | 45371 |
chr5 | 177657660 | 177657762 | E070 | 45626 |
chr5 | 177576659 | 177576847 | E071 | -35187 |
chr5 | 177576911 | 177576991 | E071 | -35043 |
chr5 | 177577013 | 177577087 | E071 | -34947 |
chr5 | 177579529 | 177579619 | E071 | -32415 |
chr5 | 177633799 | 177634006 | E071 | 21765 |
chr5 | 177634057 | 177634818 | E071 | 22023 |
chr5 | 177640320 | 177640394 | E071 | 28286 |
chr5 | 177640479 | 177640559 | E071 | 28445 |
chr5 | 177656761 | 177656845 | E071 | 44727 |
chr5 | 177656884 | 177656946 | E071 | 44850 |
chr5 | 177657023 | 177657131 | E071 | 44989 |
chr5 | 177657264 | 177657318 | E071 | 45230 |
chr5 | 177657405 | 177657459 | E071 | 45371 |
chr5 | 177657660 | 177657762 | E071 | 45626 |
chr5 | 177579529 | 177579619 | E072 | -32415 |
chr5 | 177657023 | 177657131 | E072 | 44989 |
chr5 | 177657264 | 177657318 | E072 | 45230 |
chr5 | 177657405 | 177657459 | E072 | 45371 |
chr5 | 177657660 | 177657762 | E072 | 45626 |
chr5 | 177570584 | 177570645 | E073 | -41389 |
chr5 | 177570686 | 177570797 | E073 | -41237 |
chr5 | 177570931 | 177571213 | E073 | -40821 |
chr5 | 177578395 | 177578494 | E073 | -33540 |
chr5 | 177578551 | 177578723 | E073 | -33311 |
chr5 | 177578833 | 177578896 | E073 | -33138 |
chr5 | 177579529 | 177579619 | E073 | -32415 |
chr5 | 177633799 | 177634006 | E073 | 21765 |
chr5 | 177634057 | 177634818 | E073 | 22023 |
chr5 | 177634826 | 177634972 | E073 | 22792 |
chr5 | 177635074 | 177635315 | E073 | 23040 |
chr5 | 177635362 | 177635454 | E073 | 23328 |
chr5 | 177635660 | 177635854 | E073 | 23626 |
chr5 | 177657405 | 177657459 | E073 | 45371 |
chr5 | 177657660 | 177657762 | E073 | 45626 |
chr5 | 177578833 | 177578896 | E074 | -33138 |
chr5 | 177579529 | 177579619 | E074 | -32415 |
chr5 | 177581683 | 177581747 | E074 | -30287 |
chr5 | 177633799 | 177634006 | E074 | 21765 |
chr5 | 177634057 | 177634818 | E074 | 22023 |
chr5 | 177634826 | 177634972 | E074 | 22792 |
chr5 | 177635074 | 177635315 | E074 | 23040 |
chr5 | 177657023 | 177657131 | E074 | 44989 |
chr5 | 177657264 | 177657318 | E074 | 45230 |
chr5 | 177657405 | 177657459 | E074 | 45371 |
chr5 | 177657660 | 177657762 | E074 | 45626 |
chr5 | 177660594 | 177660644 | E074 | 48560 |
chr5 | 177633799 | 177634006 | E081 | 21765 |
chr5 | 177634057 | 177634818 | E081 | 22023 |
chr5 | 177645989 | 177646080 | E081 | 33955 |
chr5 | 177657023 | 177657131 | E081 | 44989 |
chr5 | 177657264 | 177657318 | E081 | 45230 |
chr5 | 177657405 | 177657459 | E081 | 45371 |
chr5 | 177657660 | 177657762 | E081 | 45626 |
chr5 | 177581683 | 177581747 | E082 | -30287 |
chr5 | 177634826 | 177634972 | E082 | 22792 |
chr5 | 177635074 | 177635315 | E082 | 23040 |
chr5 | 177657405 | 177657459 | E082 | 45371 |
chr5 | 177657660 | 177657762 | E082 | 45626 |
Chromosome | Start | End | Region | Distance(-/+:Up/Downstream) |
---|---|---|---|---|
chr5 | 177580272 | 177580431 | E067 | -31603 |
chr5 | 177580579 | 177581256 | E067 | -30778 |
chr5 | 177581258 | 177581342 | E067 | -30692 |
chr5 | 177630843 | 177632916 | E067 | 18809 |
chr5 | 177658763 | 177660458 | E067 | 46729 |
chr5 | 177580272 | 177580431 | E068 | -31603 |
chr5 | 177580579 | 177581256 | E068 | -30778 |
chr5 | 177581258 | 177581342 | E068 | -30692 |
chr5 | 177630843 | 177632916 | E068 | 18809 |
chr5 | 177658763 | 177660458 | E068 | 46729 |
chr5 | 177580272 | 177580431 | E069 | -31603 |
chr5 | 177580579 | 177581256 | E069 | -30778 |
chr5 | 177581258 | 177581342 | E069 | -30692 |
chr5 | 177630843 | 177632916 | E069 | 18809 |
chr5 | 177658763 | 177660458 | E069 | 46729 |
chr5 | 177580272 | 177580431 | E070 | -31603 |
chr5 | 177580579 | 177581256 | E070 | -30778 |
chr5 | 177581258 | 177581342 | E070 | -30692 |
chr5 | 177630843 | 177632916 | E070 | 18809 |
chr5 | 177658763 | 177660458 | E070 | 46729 |
chr5 | 177580272 | 177580431 | E071 | -31603 |
chr5 | 177580579 | 177581256 | E071 | -30778 |
chr5 | 177581258 | 177581342 | E071 | -30692 |
chr5 | 177630843 | 177632916 | E071 | 18809 |
chr5 | 177658763 | 177660458 | E071 | 46729 |
chr5 | 177580272 | 177580431 | E072 | -31603 |
chr5 | 177580579 | 177581256 | E072 | -30778 |
chr5 | 177581258 | 177581342 | E072 | -30692 |
chr5 | 177630843 | 177632916 | E072 | 18809 |
chr5 | 177658763 | 177660458 | E072 | 46729 |
chr5 | 177580272 | 177580431 | E073 | -31603 |
chr5 | 177580579 | 177581256 | E073 | -30778 |
chr5 | 177581258 | 177581342 | E073 | -30692 |
chr5 | 177630843 | 177632916 | E073 | 18809 |
chr5 | 177658763 | 177660458 | E073 | 46729 |
chr5 | 177580272 | 177580431 | E074 | -31603 |
chr5 | 177580579 | 177581256 | E074 | -30778 |
chr5 | 177581258 | 177581342 | E074 | -30692 |
chr5 | 177630843 | 177632916 | E074 | 18809 |
chr5 | 177658763 | 177660458 | E074 | 46729 |
chr5 | 177580272 | 177580431 | E081 | -31603 |
chr5 | 177580579 | 177581256 | E081 | -30778 |
chr5 | 177580272 | 177580431 | E082 | -31603 |
chr5 | 177580579 | 177581256 | E082 | -30778 |
chr5 | 177581258 | 177581342 | E082 | -30692 |
chr5 | 177630843 | 177632916 | E082 | 18809 |
chr5 | 177658763 | 177660458 | E082 | 46729 |