rs74641711

Homo sapiens
C>T
CTDP1 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
T=0015 (466/29940,GnomAD)
T=0015 (443/29118,TOPMED)
T=0005 (27/5008,1000G)
T=0022 (84/3854,ALSPAC)
T=0028 (103/3708,TWINSUK)
chr18:79727394 (GRCh38.p7) (18q23)
OD
GWASCatalog
1   publication(s)
See rs on genome
95 Enhancers around
10 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 18NC_000018.10:g.79727394C>T
GRCh37.p13 chr 18NC_000018.9:g.77487394C>T
CTDP1 RefSeqGene LRG_236

Gene: CTDP1, CTD phosphatase subunit 1(plus strand)

Molecule type Change Amino acid[Codon] SO Term
CTDP1 transcript variant 3NM_001202504.1:c.N/AIntron Variant
CTDP1 transcript variant 4NM_001318511.1:c.N/AIntron Variant
CTDP1 transcript variant 1NM_004715.4:c.N/AIntron Variant
CTDP1 transcript variant 2NM_048368.3:c.N/AIntron Variant
CTDP1 transcript variant X1XM_011526261.1:c.N/AIntron Variant
CTDP1 transcript variant X2XM_017026078.1:c.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.998T=0.002
1000GenomesAmericanSub694C=1.000T=0.000
1000GenomesEast AsianSub1008C=1.000T=0.000
1000GenomesEuropeSub1006C=0.977T=0.023
1000GenomesGlobalStudy-wide5008C=0.995T=0.005
1000GenomesSouth AsianSub978C=1.000T=0.000
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.978T=0.022
The Genome Aggregation DatabaseAfricanSub8712C=0.995T=0.005
The Genome Aggregation DatabaseAmericanSub838C=0.990T=0.010
The Genome Aggregation DatabaseEast AsianSub1618C=1.000T=0.000
The Genome Aggregation DatabaseEuropeSub18470C=0.977T=0.022
The Genome Aggregation DatabaseGlobalStudy-wide29940C=0.984T=0.015
The Genome Aggregation DatabaseOtherSub302C=0.990T=0.010
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.984T=0.015
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.972T=0.028
PMID Title Author Journal
29478698Genome-wide Association Study Identifies a Regulatory Variant of RGMA Associated With Opioid Dependence in European Americans.Cheng ZBiol Psychiatry

P-Value

SNP ID p-value Traits Study
rs746417116E-07Opioid dependence29478698

eQTL of rs74641711 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs74641711 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr187743773077437907E067-49487
chr187744149677442073E067-45321
chr187744209377442222E067-45172
chr187744231977442396E067-44998
chr187745866177458797E067-28597
chr187745885577459301E067-28093
chr187749841677498466E06711022
chr187749852977498969E06711135
chr187743773077437907E068-49487
chr187744149677442073E068-45321
chr187744209377442222E068-45172
chr187744231977442396E068-44998
chr187745885577459301E068-28093
chr187749408277494261E0686688
chr187749841677498466E06811022
chr187749852977498969E06811135
chr187749907777499157E06811683
chr187743773077437907E069-49487
chr187744149677442073E069-45321
chr187744209377442222E069-45172
chr187744231977442396E069-44998
chr187745885577459301E069-28093
chr187746822177468271E069-19123
chr187749815977498275E06910765
chr187749832777498386E06910933
chr187749841677498466E06911022
chr187749852977498969E06911135
chr187749907777499157E06911683
chr187750961077509789E06922216
chr187743773077437907E070-49487
chr187744149677442073E070-45321
chr187745304177453157E070-34237
chr187745327477453324E070-34070
chr187745354277453693E070-33701
chr187748250977482681E070-4713
chr187748280577482849E070-4545
chr187748332377483373E070-4021
chr187750961077509789E07022216
chr187743773077437907E071-49487
chr187744149677442073E071-45321
chr187745866177458797E071-28597
chr187745885577459301E071-28093
chr187749815977498275E07110765
chr187749832777498386E07110933
chr187749841677498466E07111022
chr187749852977498969E07111135
chr187749907777499157E07111683
chr187743773077437907E072-49487
chr187744149677442073E072-45321
chr187744231977442396E072-44998
chr187745866177458797E072-28597
chr187745885577459301E072-28093
chr187745964077459884E072-27510
chr187745991977460041E072-27353
chr187749815977498275E07210765
chr187749832777498386E07210933
chr187749852977498969E07211135
chr187749907777499157E07211683
chr187749928077499375E07211886
chr187749939977499460E07212005
chr187750945477509545E07222060
chr187750961077509789E07222216
chr187743773077437907E073-49487
chr187745769277457742E073-29652
chr187745866177458797E073-28597
chr187745885577459301E073-28093
chr187749815977498275E07310765
chr187749832777498386E07310933
chr187749841677498466E07311022
chr187749852977498969E07311135
chr187743773077437907E074-49487
chr187744149677442073E074-45321
chr187745885577459301E074-28093
chr187746822177468271E074-19123
chr187746849177468541E074-18853
chr187746874377468797E074-18597
chr187749815977498275E07410765
chr187749832777498386E07410933
chr187749841677498466E07411022
chr187749852977498969E07411135
chr187749907777499157E07411683
chr187749928077499375E07411886
chr187749939977499460E07412005
chr187743773077437907E081-49487
chr187749408277494261E0816688
chr187749928077499375E08111886
chr187749939977499460E08112005
chr187749968577499771E08112291
chr187750036977500467E08112975
chr187750054377500852E08113149
chr187750096877501161E08113574
chr187750141477501746E08114020
chr187750945477509545E08122060
chr187750961077509789E08122216
chr187743773077437907E082-49487










Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr187743794377440996E067-46398
chr187743794377440996E068-46398
chr187743794377440996E069-46398
chr187743794377440996E070-46398
chr187743794377440996E071-46398
chr187743794377440996E072-46398
chr187743794377440996E073-46398
chr187743794377440996E074-46398
chr187743794377440996E081-46398
chr187743794377440996E082-46398