rs7500931

Homo sapiens
T>C
None
Check p-value
SNV (Single Nucleotide Variation)
C=0279 (8345/29898,GnomAD)
C=0262 (7628/29118,TOPMED)
C=0219 (1096/5008,1000G)
chr16:51245913 (GRCh38.p7) (16q12.1)
AD
GWASdb2
1   publication(s)
See rs on genome
179 Enhancers around
2 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 16NC_000016.10:g.51245913T>C
GRCh37.p13 chr 16NC_000016.9:g.51279824T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.824C=0.176
1000GenomesAmericanSub694T=0.820C=0.180
1000GenomesEast AsianSub1008T=0.797C=0.203
1000GenomesEuropeSub1006T=0.673C=0.327
1000GenomesGlobalStudy-wide5008T=0.781C=0.219
1000GenomesSouth AsianSub978T=0.790C=0.210
The Genome Aggregation DatabaseAfricanSub8700T=0.810C=0.190
The Genome Aggregation DatabaseAmericanSub836T=0.780C=0.220
The Genome Aggregation DatabaseEast AsianSub1612T=0.811C=0.189
The Genome Aggregation DatabaseEuropeSub18448T=0.669C=0.330
The Genome Aggregation DatabaseGlobalStudy-wide29898T=0.720C=0.279
The Genome Aggregation DatabaseOtherSub302T=0.670C=0.330
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.738C=0.262
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs75009310.000989alcohol dependence21314694

eQTL of rs7500931 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs7500931 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr165126572351265826E067-13998
chr165127035451270567E067-9257
chr165127062951270885E067-8939
chr165127094851271118E067-8706
chr165127123351271293E067-8531
chr165127138551271435E067-8389
chr165127150951271567E067-8257
chr165127168351271774E067-8050
chr165127179251272029E067-7795
chr165127208551272196E067-7628
chr165127667951276764E067-3060
chr165130247151302582E06722647
chr165132431651325072E06744492
chr165124367651244456E068-35368
chr165127062951270885E068-8939
chr165127094851271118E068-8706
chr165127123351271293E068-8531
chr165127138551271435E068-8389
chr165127150951271567E068-8257
chr165127168351271774E068-8050
chr165127179251272029E068-7795
chr165127208551272196E068-7628
chr165127667951276764E068-3060
chr165130247151302582E06822647
chr165130270251302754E06822878
chr165130288051302930E06823056
chr165130315651303210E06823332
chr165131017751310227E06830353
chr165131037451310533E06830550
chr165124354451243658E069-36166
chr165124367651244456E069-35368
chr165126346151263511E069-16313
chr165126358751263670E069-16154
chr165126572351265826E069-13998
chr165126890351269046E069-10778
chr165126906051269110E069-10714
chr165126952051269592E069-10232
chr165126960351269783E069-10041
chr165127004151270110E069-9714
chr165127035451270567E069-9257
chr165127062951270885E069-8939
chr165127094851271118E069-8706
chr165127168351271774E069-8050
chr165127179251272029E069-7795
chr165127208551272196E069-7628
chr165127297451273024E069-6800
chr165130288051302930E06923056
chr165130315651303210E06923332
chr165130530551305377E06925481
chr165130546951305509E06925645
chr165130889551308969E06929071
chr165130918851309240E06929364
chr165131017751310227E06930353
chr165131037451310533E06930550
chr165124367651244456E070-35368
chr165125905951259170E070-20654
chr165125959151259641E070-20183
chr165125970651259756E070-20068
chr165125982351260057E070-19767
chr165126014051260309E070-19515
chr165127062951270885E070-8939
chr165127094851271118E070-8706
chr165127123351271293E070-8531
chr165127138551271435E070-8389
chr165127150951271567E070-8257
chr165127168351271774E070-8050
chr165127179251272029E070-7795
chr165127208551272196E070-7628
chr165127834951278405E070-1419
chr165127877351278833E070-991
chr165127887951278929E070-895
chr165124354451243658E071-36166
chr165124367651244456E071-35368
chr165126308851263177E071-16647
chr165126346151263511E071-16313
chr165126358751263670E071-16154
chr165126572351265826E071-13998
chr165126890351269046E071-10778
chr165126906051269110E071-10714
chr165126952051269592E071-10232
chr165126960351269783E071-10041
chr165127004151270110E071-9714
chr165127035451270567E071-9257
chr165127062951270885E071-8939
chr165127094851271118E071-8706
chr165127123351271293E071-8531
chr165127208551272196E071-7628
chr165127297451273024E071-6800
chr165127623351276293E071-3531
chr165127630851276510E071-3314
chr165127653051276580E071-3244
chr165127667951276764E071-3060
chr165127961651279765E071-59
chr165130035751300397E07120533
chr165130270251302754E07122878
chr165130288051302930E07123056
chr165130315651303210E07123332
chr165130530551305377E07125481
chr165130546951305509E07125645
chr165131017751310227E07130353
chr165131037451310533E07130550
chr165124354451243658E072-36166
chr165124367651244456E072-35368
chr165126308851263177E072-16647
chr165126346151263511E072-16313
chr165126358751263670E072-16154
chr165127004151270110E072-9714
chr165127035451270567E072-9257
chr165127062951270885E072-8939
chr165127094851271118E072-8706
chr165127123351271293E072-8531
chr165127138551271435E072-8389
chr165127150951271567E072-8257
chr165127168351271774E072-8050
chr165127179251272029E072-7795
chr165127208551272196E072-7628
chr165127297451273024E072-6800
chr165127321151273261E072-6563
chr165127908751279218E072-606
chr165127925851279475E072-349
chr165130035751300397E07220533
chr165130270251302754E07222878
chr165130288051302930E07223056
chr165130315651303210E07223332
chr165130530551305377E07225481
chr165130546951305509E07225645
chr165130918851309240E07229364
chr165131017751310227E07230353
chr165131037451310533E07230550
chr165131127351311313E07231449
chr165132511151325207E07245287
chr165124354451243658E073-36166
chr165124367651244456E073-35368
chr165127094851271118E073-8706
chr165127123351271293E073-8531
chr165127138551271435E073-8389
chr165127150951271567E073-8257
chr165124354451243658E074-36166
chr165126308851263177E074-16647
chr165126346151263511E074-16313
chr165126358751263670E074-16154
chr165126572351265826E074-13998
chr165126890351269046E074-10778
chr165126906051269110E074-10714
chr165126952051269592E074-10232
chr165126960351269783E074-10041
chr165127062951270885E074-8939
chr165127094851271118E074-8706
chr165127123351271293E074-8531
chr165127138551271435E074-8389
chr165127150951271567E074-8257
chr165127168351271774E074-8050
chr165127179251272029E074-7795
chr165127208551272196E074-7628
chr165127297451273024E074-6800
chr165127501251275062E074-4762
chr165127508751275213E074-4611
chr165127630851276510E074-3314
chr165127653051276580E074-3244
chr165127667951276764E074-3060
chr165127877351278833E074-991
chr165127887951278929E074-895
chr165127908751279218E074-606
chr165127925851279475E074-349
chr165127961651279765E074-59
chr165130315651303210E07423332
chr165130530551305377E07425481
chr165130546951305509E07425645
chr165130918851309240E07429364
chr165131037451310533E07430550
chr165132511151325207E07445287
chr165132530151325535E07445477
chr165124354451243658E081-36166
chr165125905951259170E082-20654
chr165125959151259641E082-20183
chr165125970651259756E082-20068
chr165125982351260057E082-19767
chr165127179251272029E082-7795
chr165127208551272196E082-7628










Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr165130363051303680E07423806
chr165130404651304100E07424222