rs75104126

Homo sapiens
C>A / C>T
None
Check p-value
SNV (Single Nucleotide Variation)
T=0136 (4095/29904,GnomAD)
T=0118 (3447/29116,TOPMED)
T=0142 (712/5008,1000G)
T=0156 (602/3854,ALSPAC)
T=0156 (578/3708,TWINSUK)
chr13:54883367 (GRCh38.p7) (13q21.1)
AD
GWASCatalog
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 13NC_000013.11:g.54883367C>A
GRCh38.p7 chr 13NC_000013.11:g.54883367C>T
GRCh37.p13 chr 13NC_000013.10:g.55457502C>A
GRCh37.p13 chr 13NC_000013.10:g.55457502C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.989T=0.011
1000GenomesAmericanSub694C=0.750T=0.250
1000GenomesEast AsianSub1008C=0.780T=0.220
1000GenomesEuropeSub1006C=0.816T=0.184
1000GenomesGlobalStudy-wide5008C=0.858T=0.142
1000GenomesSouth AsianSub978C=0.880T=0.120
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.844T=0.156
The Genome Aggregation DatabaseAfricanSub8716C=0.965T=0.035
The Genome Aggregation DatabaseAmericanSub830C=0.800T=0.20,
The Genome Aggregation DatabaseEast AsianSub1612C=0.760T=0.240
The Genome Aggregation DatabaseEuropeSub18444C=0.827T=0.172
The Genome Aggregation DatabaseGlobalStudy-wide29904C=0.863T=0.136
The Genome Aggregation DatabaseOtherSub302C=0.790T=0.21,
Trans-Omics for Precision MedicineGlobalStudy-wide29116C=0.881T=0.118
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.844T=0.156
PMID Title Author Journal
29071344Genetic Risk Variants Associated With Comorbid Alcohol Dependence and Major Depression.Zhou HJAMA Psychiatry

P-Value

SNP ID p-value Traits Study
rs751041263E-06alcohol dependence29071344

eQTL of rs75104126 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs75104126 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.