SNP Detail Info-rs7523622

Organism: Homo sapiens

Alleles: C>A

Gene : Feature

LOC105378768 : Intron Variant

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A=0018 (545/29970,GnomAD)
A=0025 (754/29118,TOPMED)
A=0021 (105/5008,1000G)

Position: chr1:62424839 (GRCh38.p7) (1p31.3)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 38 Enhancers around

Promoter: 10 Promoters around

Sequence Name	Change(s)
GRCh38.p7 chr 1	NC_000001.11:g.62424839C>A
GRCh37.p13 chr 1	NC_000001.10:g.62890510C>A

Molecule type	Change	Amino acid[Codon]	SO Term
LOC105378768 transcript	XR_947449.2:n.	N/A	Intron Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	C=0.926	A=0.074
1000Genomes	American	Sub	694	C=0.990	A=0.010
1000Genomes	East Asian	Sub	1008	C=1.000	A=0.000
1000Genomes	Europe	Sub	1006	C=0.999	A=0.001
1000Genomes	Global	Study-wide	5008	C=0.979	A=0.021
1000Genomes	South Asian	Sub	978	C=1.000	A=0.000
The Genome Aggregation Database	African	Sub	8726	C=0.939	A=0.061
The Genome Aggregation Database	American	Sub	838	C=0.990	A=0.010
The Genome Aggregation Database	East Asian	Sub	1618	C=1.000	A=0.000
The Genome Aggregation Database	Europe	Sub	18486	C=0.999	A=0.000
The Genome Aggregation Database	Global	Study-wide	29970	C=0.981	A=0.018
The Genome Aggregation Database	Other	Sub	302	C=1.000	A=0.000
Trans-Omics for Precision Medicine	Global	Study-wide	29118	C=0.974	A=0.025

PMID	Title	Author	Journal
21314694	Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.	Kendler KS	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs7523622	0.000862	alcohol dependence	21314694

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr1	62923694	62924069	E067	33184
chr1	62850074	62850282	E068	-40228
chr1	62850345	62850692	E068	-39818
chr1	62849772	62849878	E069	-40632
chr1	62849924	62850006	E069	-40504
chr1	62850074	62850282	E069	-40228
chr1	62850345	62850692	E069	-39818
chr1	62850345	62850692	E070	-39818
chr1	62851663	62852887	E070	-37623
chr1	62865233	62865341	E070	-25169
chr1	62866524	62866604	E070	-23906
chr1	62866659	62867175	E070	-23335
chr1	62905755	62905955	E070	15245
chr1	62849772	62849878	E071	-40632
chr1	62849924	62850006	E071	-40504
chr1	62850074	62850282	E071	-40228
chr1	62850345	62850692	E071	-39818
chr1	62850906	62851015	E071	-39495
chr1	62861100	62861424	E071	-29086
chr1	62866524	62866604	E071	-23906
chr1	62866659	62867175	E071	-23335
chr1	62900012	62900248	E071	9502
chr1	62849772	62849878	E072	-40632
chr1	62849924	62850006	E072	-40504
chr1	62850074	62850282	E072	-40228
chr1	62850345	62850692	E072	-39818
chr1	62861100	62861424	E072	-29086
chr1	62923694	62924069	E072	33184
chr1	62850074	62850282	E073	-40228
chr1	62850345	62850692	E073	-39818
chr1	62850906	62851015	E073	-39495
chr1	62849772	62849878	E074	-40632
chr1	62849924	62850006	E074	-40504
chr1	62850074	62850282	E074	-40228
chr1	62850345	62850692	E074	-39818
chr1	62850906	62851015	E074	-39495
chr1	62859812	62859872	E074	-30638
chr1	62861100	62861424	E074	-29086

Chromosome	Start	End	Region	Distance(-/+:Up/Downstream)
chr1	62900968	62904238	E067	10458
chr1	62900968	62904238	E068	10458
chr1	62900968	62904238	E069	10458
chr1	62900968	62904238	E070	10458
chr1	62900968	62904238	E071	10458
chr1	62900968	62904238	E072	10458
chr1	62900968	62904238	E073	10458
chr1	62900968	62904238	E074	10458
chr1	62900968	62904238	E081	10458
chr1	62900968	62904238	E082	10458

rs7523622