SNP Detail Info-rs7530932

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A=0085 (2567/29930,GnomAD)
A=0121 (3538/29118,TOPMED)
A=0083 (415/5008,1000G)
A=0012 (45/3854,ALSPAC)
A=0012 (43/3708,TWINSUK)

Position: chr1:25140670 (GRCh38.p7) (1p36.11)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 36 Enhancers around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 1	NC_000001.11:g.25140670G>A
GRCh37.p13 chr 1	NC_000001.10:g.25467161G>A

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.721	A=0.279
1000Genomes	American	Sub	694	G=0.960	A=0.040
1000Genomes	East Asian	Sub	1008	G=0.998	A=0.002
1000Genomes	Europe	Sub	1006	G=0.992	A=0.008
1000Genomes	Global	Study-wide	5008	G=0.917	A=0.083
1000Genomes	South Asian	Sub	978	G=0.990	A=0.010
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.988	A=0.012
The Genome Aggregation Database	African	Sub	8704	G=0.735	A=0.265
The Genome Aggregation Database	American	Sub	834	G=0.980	A=0.020
The Genome Aggregation Database	East Asian	Sub	1618	G=0.999	A=0.001
The Genome Aggregation Database	Europe	Sub	18472	G=0.987	A=0.012
The Genome Aggregation Database	Global	Study-wide	29930	G=0.914	A=0.085
The Genome Aggregation Database	Other	Sub	302	G=0.980	A=0.020
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.878	A=0.121
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.988	A=0.012

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs7530932	0.00082	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr1	25493809	25494708	E067	26648
chr1	25501340	25501472	E067	34179
chr1	25501576	25501807	E067	34415
chr1	25493809	25494708	E068	26648
chr1	25501340	25501472	E068	34179
chr1	25501576	25501807	E068	34415
chr1	25493809	25494708	E069	26648
chr1	25494747	25494936	E069	27586
chr1	25500876	25500924	E069	33715
chr1	25500934	25500974	E069	33773
chr1	25501000	25501101	E069	33839
chr1	25501340	25501472	E069	34179
chr1	25501576	25501807	E069	34415
chr1	25427580	25427718	E071	-39443
chr1	25427762	25427825	E071	-39336
chr1	25427866	25428530	E071	-38631
chr1	25493809	25494708	E071	26648
chr1	25494747	25494936	E071	27586
chr1	25500876	25500924	E071	33715
chr1	25500934	25500974	E071	33773
chr1	25501000	25501101	E071	33839
chr1	25501340	25501472	E071	34179
chr1	25501576	25501807	E071	34415
chr1	25493809	25494708	E072	26648
chr1	25501000	25501101	E072	33839
chr1	25501340	25501472	E072	34179
chr1	25501576	25501807	E072	34415
chr1	25493809	25494708	E073	26648
chr1	25424888	25424928	E074	-42233
chr1	25425421	25425471	E074	-41690
chr1	25427866	25428530	E074	-38631
chr1	25493809	25494708	E074	26648
chr1	25494747	25494936	E074	27586
chr1	25501000	25501101	E074	33839
chr1	25501340	25501472	E074	34179
chr1	25501576	25501807	E074	34415

rs7530932