SNP Detail Info-rs7534785

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

A=0064 (1914/29834,GnomAD)
A=0072 (2111/29116,TOPMED)
A=0108 (543/5008,1000G)
A=0028 (106/3854,ALSPAC)
A=0026 (95/3708,TWINSUK)

Position: chr1:214929079 (GRCh38.p7) (1q41)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 22 Enhancers around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 1	NC_000001.11:g.214929079G>A
GRCh37.p13 chr 1	NC_000001.10:g.215102422G>A

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.896	A=0.104
1000Genomes	American	Sub	694	G=0.940	A=0.060
1000Genomes	East Asian	Sub	1008	G=0.809	A=0.191
1000Genomes	Europe	Sub	1006	G=0.971	A=0.029
1000Genomes	Global	Study-wide	5008	G=0.892	A=0.108
1000Genomes	South Asian	Sub	978	G=0.860	A=0.140
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.972	A=0.028
The Genome Aggregation Database	African	Sub	8686	G=0.890	A=0.110
The Genome Aggregation Database	American	Sub	838	G=0.950	A=0.050
The Genome Aggregation Database	East Asian	Sub	1610	G=0.803	A=0.197
The Genome Aggregation Database	Europe	Sub	18398	G=0.968	A=0.031
The Genome Aggregation Database	Global	Study-wide	29834	G=0.935	A=0.064
The Genome Aggregation Database	Other	Sub	302	G=0.950	A=0.050
Trans-Omics for Precision Medicine	Global	Study-wide	29116	G=0.927	A=0.072
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.974	A=0.026

PMID	Title	Author	Journal
21314694	Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.	Kendler KS	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs7534785	0.000529	alcohol dependence	21314694

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr1	215139752	215140020	E067	37330
chr1	215139752	215140020	E068	37330
chr1	215139752	215140020	E069	37330
chr1	215071003	215071283	E070	-31139
chr1	215139752	215140020	E072	37330
chr1	215139752	215140020	E074	37330
chr1	215069237	215069287	E081	-33135
chr1	215070022	215070749	E081	-31673
chr1	215071003	215071283	E081	-31139
chr1	215071580	215071845	E081	-30577
chr1	215072271	215072312	E081	-30110
chr1	215085536	215085834	E081	-16588
chr1	215085959	215086228	E081	-16194
chr1	215086243	215086440	E081	-15982
chr1	215069237	215069287	E082	-33135
chr1	215070022	215070749	E082	-31673
chr1	215071003	215071283	E082	-31139
chr1	215071580	215071845	E082	-30577
chr1	215085536	215085834	E082	-16588
chr1	215085959	215086228	E082	-16194
chr1	215086243	215086440	E082	-15982
chr1	215087379	215087564	E082	-14858

rs7534785