Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 1 | NC_000001.11:g.220452744A>G |
GRCh38.p7 chr 1 | NC_000001.11:g.220452744A>T |
GRCh37.p13 chr 1 | NC_000001.10:g.220626086A>G |
GRCh37.p13 chr 1 | NC_000001.10:g.220626086A>T |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | A=0.793 | G=0.207 |
1000Genomes | American | Sub | 694 | A=0.950 | G=0.050 |
1000Genomes | East Asian | Sub | 1008 | A=0.887 | G=0.113 |
1000Genomes | Europe | Sub | 1006 | A=0.948 | G=0.052 |
1000Genomes | Global | Study-wide | 5008 | A=0.875 | G=0.125 |
1000Genomes | South Asian | Sub | 978 | A=0.840 | G=0.160 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | A=0.953 | G=0.047 |
The Genome Aggregation Database | African | Sub | 8704 | A=0.838 | G=0.162 |
The Genome Aggregation Database | American | Sub | 838 | A=0.960 | G=0.04, |
The Genome Aggregation Database | East Asian | Sub | 1614 | A=0.889 | G=0.111 |
The Genome Aggregation Database | Europe | Sub | 18490 | A=0.947 | G=0.052 |
The Genome Aggregation Database | Global | Study-wide | 29948 | A=0.912 | G=0.087 |
The Genome Aggregation Database | Other | Sub | 302 | A=0.920 | G=0.08, |
Trans-Omics for Precision Medicine | Global | Study-wide | 29116 | A=0.884 | G=0.115 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | A=0.950 | G=0.050 |
PMID | Title | Author | Journal |
---|---|---|---|
20158304 | A genomewide association study of nicotine and alcohol dependence in Australian and Dutch populations. | Lind PA | Twin Res Hum Genet |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs7553380 | 5.29E-06 | alcohol and nictotine co-dependence | 20158304 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr1 | 45107517 | 45107568 | E067 | -47340 |
chr1 | 45108071 | 45108156 | E067 | -46752 |
chr1 | 45108554 | 45108685 | E067 | -46223 |
chr1 | 45108710 | 45108847 | E067 | -46061 |
chr1 | 45109296 | 45109349 | E067 | -45559 |
chr1 | 45109585 | 45109639 | E067 | -45269 |
chr1 | 45109726 | 45109894 | E067 | -45014 |
chr1 | 45110625 | 45110726 | E067 | -44182 |
chr1 | 45110834 | 45110899 | E067 | -44009 |
chr1 | 45111130 | 45111775 | E067 | -43133 |
chr1 | 45111850 | 45111956 | E067 | -42952 |
chr1 | 45111998 | 45112215 | E067 | -42693 |
chr1 | 45112221 | 45112374 | E067 | -42534 |
chr1 | 45112468 | 45112680 | E067 | -42228 |
chr1 | 45114993 | 45115043 | E067 | -39865 |
chr1 | 45115847 | 45116470 | E067 | -38438 |
chr1 | 45118174 | 45118962 | E067 | -35946 |
chr1 | 45119024 | 45119149 | E067 | -35759 |
chr1 | 45125866 | 45126295 | E067 | -28613 |
chr1 | 45128090 | 45128250 | E067 | -26658 |
chr1 | 45128437 | 45128689 | E067 | -26219 |
chr1 | 45136838 | 45136901 | E067 | -18007 |
chr1 | 45137778 | 45138440 | E067 | -16468 |
chr1 | 45138478 | 45138719 | E067 | -16189 |
chr1 | 45180599 | 45181190 | E067 | 25691 |
chr1 | 45182855 | 45183659 | E067 | 27947 |
chr1 | 45105940 | 45106133 | E068 | -48775 |
chr1 | 45107517 | 45107568 | E068 | -47340 |
chr1 | 45108071 | 45108156 | E068 | -46752 |
chr1 | 45108554 | 45108685 | E068 | -46223 |
chr1 | 45108710 | 45108847 | E068 | -46061 |
chr1 | 45109296 | 45109349 | E068 | -45559 |
chr1 | 45109585 | 45109639 | E068 | -45269 |
chr1 | 45109726 | 45109894 | E068 | -45014 |
chr1 | 45110625 | 45110726 | E068 | -44182 |
chr1 | 45110834 | 45110899 | E068 | -44009 |
chr1 | 45111130 | 45111775 | E068 | -43133 |
chr1 | 45111850 | 45111956 | E068 | -42952 |
chr1 | 45111998 | 45112215 | E068 | -42693 |
chr1 | 45115847 | 45116470 | E068 | -38438 |
chr1 | 45118174 | 45118962 | E068 | -35946 |
chr1 | 45127443 | 45128025 | E068 | -26883 |
chr1 | 45128090 | 45128250 | E068 | -26658 |
chr1 | 45128437 | 45128689 | E068 | -26219 |
chr1 | 45136838 | 45136901 | E068 | -18007 |
chr1 | 45137778 | 45138440 | E068 | -16468 |
chr1 | 45138478 | 45138719 | E068 | -16189 |
chr1 | 45142679 | 45142759 | E068 | -12149 |
chr1 | 45142769 | 45143222 | E068 | -11686 |
chr1 | 45180288 | 45180446 | E068 | 25380 |
chr1 | 45194802 | 45195282 | E068 | 39894 |
chr1 | 45195600 | 45195778 | E068 | 40692 |
chr1 | 45107517 | 45107568 | E069 | -47340 |
chr1 | 45108071 | 45108156 | E069 | -46752 |
chr1 | 45108554 | 45108685 | E069 | -46223 |
chr1 | 45108710 | 45108847 | E069 | -46061 |
chr1 | 45109296 | 45109349 | E069 | -45559 |
chr1 | 45109585 | 45109639 | E069 | -45269 |
chr1 | 45109726 | 45109894 | E069 | -45014 |
chr1 | 45110625 | 45110726 | E069 | -44182 |
chr1 | 45110834 | 45110899 | E069 | -44009 |
chr1 | 45111130 | 45111775 | E069 | -43133 |
chr1 | 45111850 | 45111956 | E069 | -42952 |
chr1 | 45111998 | 45112215 | E069 | -42693 |
chr1 | 45112221 | 45112374 | E069 | -42534 |
chr1 | 45112468 | 45112680 | E069 | -42228 |
chr1 | 45113488 | 45113634 | E069 | -41274 |
chr1 | 45113717 | 45113913 | E069 | -40995 |
chr1 | 45114246 | 45114763 | E069 | -40145 |
chr1 | 45114853 | 45114931 | E069 | -39977 |
chr1 | 45114993 | 45115043 | E069 | -39865 |
chr1 | 45115847 | 45116470 | E069 | -38438 |
chr1 | 45118174 | 45118962 | E069 | -35946 |
chr1 | 45119024 | 45119149 | E069 | -35759 |
chr1 | 45136231 | 45136296 | E069 | -18612 |
chr1 | 45136838 | 45136901 | E069 | -18007 |
chr1 | 45137778 | 45138440 | E069 | -16468 |
chr1 | 45138478 | 45138719 | E069 | -16189 |
chr1 | 45141223 | 45141277 | E069 | -13631 |
chr1 | 45141951 | 45142602 | E069 | -12306 |
chr1 | 45142679 | 45142759 | E069 | -12149 |
chr1 | 45142769 | 45143222 | E069 | -11686 |
chr1 | 45180288 | 45180446 | E069 | 25380 |
chr1 | 45195779 | 45197284 | E069 | 40871 |
chr1 | 45125866 | 45126295 | E070 | -28613 |
chr1 | 45105940 | 45106133 | E071 | -48775 |
chr1 | 45107517 | 45107568 | E071 | -47340 |
chr1 | 45108071 | 45108156 | E071 | -46752 |
chr1 | 45108554 | 45108685 | E071 | -46223 |
chr1 | 45108710 | 45108847 | E071 | -46061 |
chr1 | 45109296 | 45109349 | E071 | -45559 |
chr1 | 45109585 | 45109639 | E071 | -45269 |
chr1 | 45109726 | 45109894 | E071 | -45014 |
chr1 | 45110625 | 45110726 | E071 | -44182 |
chr1 | 45110834 | 45110899 | E071 | -44009 |
chr1 | 45111130 | 45111775 | E071 | -43133 |
chr1 | 45111850 | 45111956 | E071 | -42952 |
chr1 | 45111998 | 45112215 | E071 | -42693 |
chr1 | 45112221 | 45112374 | E071 | -42534 |
chr1 | 45112468 | 45112680 | E071 | -42228 |
chr1 | 45113488 | 45113634 | E071 | -41274 |
chr1 | 45114246 | 45114763 | E071 | -40145 |
chr1 | 45114853 | 45114931 | E071 | -39977 |
chr1 | 45114993 | 45115043 | E071 | -39865 |
chr1 | 45115847 | 45116470 | E071 | -38438 |
chr1 | 45118174 | 45118962 | E071 | -35946 |
chr1 | 45119024 | 45119149 | E071 | -35759 |
chr1 | 45121328 | 45121503 | E071 | -33405 |
chr1 | 45125866 | 45126295 | E071 | -28613 |
chr1 | 45127443 | 45128025 | E071 | -26883 |
chr1 | 45136838 | 45136901 | E071 | -18007 |
chr1 | 45137778 | 45138440 | E071 | -16468 |
chr1 | 45138478 | 45138719 | E071 | -16189 |
chr1 | 45141223 | 45141277 | E071 | -13631 |
chr1 | 45173681 | 45173911 | E071 | 18773 |
chr1 | 45174264 | 45174490 | E071 | 19356 |
chr1 | 45107517 | 45107568 | E072 | -47340 |
chr1 | 45108071 | 45108156 | E072 | -46752 |
chr1 | 45108554 | 45108685 | E072 | -46223 |
chr1 | 45108710 | 45108847 | E072 | -46061 |
chr1 | 45109296 | 45109349 | E072 | -45559 |
chr1 | 45109585 | 45109639 | E072 | -45269 |
chr1 | 45109726 | 45109894 | E072 | -45014 |
chr1 | 45110625 | 45110726 | E072 | -44182 |
chr1 | 45110834 | 45110899 | E072 | -44009 |
chr1 | 45111130 | 45111775 | E072 | -43133 |
chr1 | 45111850 | 45111956 | E072 | -42952 |
chr1 | 45111998 | 45112215 | E072 | -42693 |
chr1 | 45112221 | 45112374 | E072 | -42534 |
chr1 | 45112468 | 45112680 | E072 | -42228 |
chr1 | 45113488 | 45113634 | E072 | -41274 |
chr1 | 45113717 | 45113913 | E072 | -40995 |
chr1 | 45114246 | 45114763 | E072 | -40145 |
chr1 | 45114853 | 45114931 | E072 | -39977 |
chr1 | 45114993 | 45115043 | E072 | -39865 |
chr1 | 45115847 | 45116470 | E072 | -38438 |
chr1 | 45118174 | 45118962 | E072 | -35946 |
chr1 | 45121328 | 45121503 | E072 | -33405 |
chr1 | 45127443 | 45128025 | E072 | -26883 |
chr1 | 45128090 | 45128250 | E072 | -26658 |
chr1 | 45128437 | 45128689 | E072 | -26219 |
chr1 | 45137778 | 45138440 | E072 | -16468 |
chr1 | 45138478 | 45138719 | E072 | -16189 |
chr1 | 45142769 | 45143222 | E072 | -11686 |
chr1 | 45180599 | 45181190 | E072 | 25691 |
chr1 | 45107517 | 45107568 | E073 | -47340 |
chr1 | 45108071 | 45108156 | E073 | -46752 |
chr1 | 45108554 | 45108685 | E073 | -46223 |
chr1 | 45108710 | 45108847 | E073 | -46061 |
chr1 | 45109296 | 45109349 | E073 | -45559 |
chr1 | 45109585 | 45109639 | E073 | -45269 |
chr1 | 45109726 | 45109894 | E073 | -45014 |
chr1 | 45110625 | 45110726 | E073 | -44182 |
chr1 | 45110834 | 45110899 | E073 | -44009 |
chr1 | 45111130 | 45111775 | E073 | -43133 |
chr1 | 45111850 | 45111956 | E073 | -42952 |
chr1 | 45114993 | 45115043 | E073 | -39865 |
chr1 | 45115847 | 45116470 | E073 | -38438 |
chr1 | 45118174 | 45118962 | E073 | -35946 |
chr1 | 45125866 | 45126295 | E073 | -28613 |
chr1 | 45127443 | 45128025 | E073 | -26883 |
chr1 | 45128090 | 45128250 | E073 | -26658 |
chr1 | 45128437 | 45128689 | E073 | -26219 |
chr1 | 45136838 | 45136901 | E073 | -18007 |
chr1 | 45137778 | 45138440 | E073 | -16468 |
chr1 | 45138478 | 45138719 | E073 | -16189 |
chr1 | 45180599 | 45181190 | E073 | 25691 |
chr1 | 45182855 | 45183659 | E073 | 27947 |
chr1 | 45105940 | 45106133 | E074 | -48775 |
chr1 | 45107517 | 45107568 | E074 | -47340 |
chr1 | 45108071 | 45108156 | E074 | -46752 |
chr1 | 45108554 | 45108685 | E074 | -46223 |
chr1 | 45108710 | 45108847 | E074 | -46061 |
chr1 | 45109296 | 45109349 | E074 | -45559 |
chr1 | 45109585 | 45109639 | E074 | -45269 |
chr1 | 45109726 | 45109894 | E074 | -45014 |
chr1 | 45110625 | 45110726 | E074 | -44182 |
chr1 | 45110834 | 45110899 | E074 | -44009 |
chr1 | 45111130 | 45111775 | E074 | -43133 |
chr1 | 45111850 | 45111956 | E074 | -42952 |
chr1 | 45113488 | 45113634 | E074 | -41274 |
chr1 | 45113717 | 45113913 | E074 | -40995 |
chr1 | 45114246 | 45114763 | E074 | -40145 |
chr1 | 45114853 | 45114931 | E074 | -39977 |
chr1 | 45114993 | 45115043 | E074 | -39865 |
chr1 | 45115847 | 45116470 | E074 | -38438 |
chr1 | 45119024 | 45119149 | E074 | -35759 |
chr1 | 45121328 | 45121503 | E074 | -33405 |
chr1 | 45136838 | 45136901 | E074 | -18007 |
chr1 | 45137778 | 45138440 | E074 | -16468 |
chr1 | 45138478 | 45138719 | E074 | -16189 |
chr1 | 45142769 | 45143222 | E074 | -11686 |
chr1 | 45173681 | 45173911 | E074 | 18773 |
chr1 | 45141223 | 45141277 | E081 | -13631 |
chr1 | 45182051 | 45182147 | E081 | 27143 |
chr1 | 45182355 | 45182453 | E081 | 27447 |
chr1 | 45182855 | 45183659 | E081 | 27947 |
chr1 | 45183921 | 45184032 | E081 | 29013 |
chr1 | 45184580 | 45184694 | E081 | 29672 |
chr1 | 45184790 | 45184859 | E081 | 29882 |
chr1 | 45185125 | 45185237 | E081 | 30217 |
chr1 | 45185246 | 45185381 | E081 | 30338 |
chr1 | 45137778 | 45138440 | E082 | -16468 |
chr1 | 45138478 | 45138719 | E082 | -16189 |
chr1 | 45182855 | 45183659 | E082 | 27947 |
chr1 | 45183921 | 45184032 | E082 | 29013 |
chr1 | 45184580 | 45184694 | E082 | 29672 |
chr1 | 45184790 | 45184859 | E082 | 29882 |
chr1 | 45185125 | 45185237 | E082 | 30217 |
chr1 | 45185246 | 45185381 | E082 | 30338 |
Chromosome | Start | End | Region | Distance(-/+:Up/Downstream) |
---|---|---|---|---|
chr1 | 45138730 | 45140922 | E067 | -13986 |
chr1 | 45138730 | 45140922 | E068 | -13986 |
chr1 | 45138730 | 45140922 | E069 | -13986 |
chr1 | 45138730 | 45140922 | E070 | -13986 |
chr1 | 45138730 | 45140922 | E071 | -13986 |
chr1 | 45138730 | 45140922 | E072 | -13986 |
chr1 | 45138730 | 45140922 | E073 | -13986 |
chr1 | 45138730 | 45140922 | E074 | -13986 |
chr1 | 45138730 | 45140922 | E081 | -13986 |
chr1 | 45138730 | 45140922 | E082 | -13986 |