rs7556152

Homo sapiens
T>G
None
Check p-value
SNV (Single Nucleotide Variation)
G=0105 (3158/29954,GnomAD)
G=0119 (3483/29118,TOPMED)
G=0159 (798/5008,1000G)
chr1:62918621 (GRCh38.p7) (1p31.3)
AD
GWASdb2
1   publication(s)
See rs on genome
24 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 1NC_000001.11:g.62918621T>G
GRCh37.p13 chr 1NC_000001.10:g.63384292T>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.797G=0.203
1000GenomesAmericanSub694T=0.950G=0.050
1000GenomesEast AsianSub1008T=0.829G=0.171
1000GenomesEuropeSub1006T=0.924G=0.076
1000GenomesGlobalStudy-wide5008T=0.841G=0.159
1000GenomesSouth AsianSub978T=0.750G=0.250
The Genome Aggregation DatabaseAfricanSub8700T=0.829G=0.171
The Genome Aggregation DatabaseAmericanSub838T=0.940G=0.060
The Genome Aggregation DatabaseEast AsianSub1618T=0.822G=0.178
The Genome Aggregation DatabaseEuropeSub18496T=0.929G=0.070
The Genome Aggregation DatabaseGlobalStudy-wide29954T=0.894G=0.105
The Genome Aggregation DatabaseOtherSub302T=0.890G=0.110
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.880G=0.119
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs75561520.000143alcohol dependence21314694

eQTL of rs7556152 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs7556152 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr16334771863348520E067-35772
chr16334070063340800E069-43492
chr16334147563341735E069-42557
chr16334147563341735E070-42557
chr16334771863348520E070-35772
chr16337027463370577E070-13715
chr16341936963419565E07035077
chr16341960863419699E07035316
chr16334070063340800E071-43492
chr16334147563341735E071-42557
chr16334291263343180E071-41112
chr16334771863348520E071-35772
chr16334070063340800E072-43492
chr16334147563341735E072-42557
chr16334291263343180E072-41112
chr16334771863348520E072-35772
chr16334070063340800E074-43492
chr16334147563341735E074-42557
chr16334771863348520E074-35772
chr16335777163358124E074-26168
chr16334771863348520E081-35772
chr16337027463370577E081-13715
chr16341936963419565E08135077
chr16341960863419699E08135316