SNP Detail Info-rs7562399

Molecule type	Change	Amino acid[Codon]	SO Term
GREB1 transcript variant a	NM_014668.3:c.	N/A	Intron Variant
GREB1 transcript variant b	NM_033090.2:c.	N/A	Genic Downstream Transcript Variant
GREB1 transcript variant c	NM_148903.2:c.	N/A	Genic Downstream Transcript Variant
GREB1 transcript variant X2	XM_005246192.4:c.	N/A	Intron Variant
GREB1 transcript variant X13	XM_005246196.3:c.	N/A	Intron Variant
GREB1 transcript variant X3	XM_011510418.2:c.	N/A	Intron Variant
GREB1 transcript variant X2	XM_011510419.2:c.	N/A	Intron Variant
GREB1 transcript variant X12	XM_011510422.2:c.	N/A	Intron Variant
GREB1 transcript variant X8	XM_011510423.2:c.	N/A	Genic Downstream Transcript Variant
GREB1 transcript variant X4	XR_001739081.1:n.	N/A	Intron Variant
GREB1 transcript variant X7	XR_922686.2:n.	N/A	Genic Downstream Transcript Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.736	A=0.264
1000Genomes	American	Sub	694	G=0.970	A=0.030
1000Genomes	East Asian	Sub	1008	G=1.000	A=0.000
1000Genomes	Europe	Sub	1006	G=0.998	A=0.002
1000Genomes	Global	Study-wide	5008	G=0.926	A=0.074
1000Genomes	South Asian	Sub	978	G=1.000	A=0.000
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.999	A=0.001
The Exome Aggregation Consortium	American	Sub	15220	G=0.873	A=0.126
The Exome Aggregation Consortium	Asian	Sub	12000	G=0.999	A=0.000
The Exome Aggregation Consortium	Europe	Sub	52682	G=0.998	A=0.001
The Exome Aggregation Consortium	Global	Study-wide	80488	G=0.975	A=0.024
The Exome Aggregation Consortium	Other	Sub	586	G=0.990	A=0.010
The Genome Aggregation Database	African	Sub	8720	G=0.757	A=0.243
The Genome Aggregation Database	American	Sub	838	G=0.990	A=0.010
The Genome Aggregation Database	East Asian	Sub	1622	G=1.000	A=0.000
The Genome Aggregation Database	Europe	Sub	18498	G=0.999	A=0.001
The Genome Aggregation Database	Global	Study-wide	29980	G=0.928	A=0.071
The Genome Aggregation Database	Other	Sub	302	G=0.990	A=0.010
Trans-Omics for Precision Medicine	Global	Study-wide	29116	G=0.892	A=0.107
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.999	A=0.001

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs7562399	0.000774	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr2	11722763	11723626	E067	-43656
chr2	11724035	11724158	E067	-43124
chr2	11724161	11724885	E067	-42397
chr2	11752644	11752718	E067	-14564
chr2	11761335	11762002	E067	-5280
chr2	11722763	11723626	E068	-43656
chr2	11724035	11724158	E068	-43124
chr2	11724161	11724885	E068	-42397
chr2	11761335	11762002	E068	-5280
chr2	11816957	11817012	E068	49675
chr2	11724161	11724885	E069	-42397
chr2	11793246	11793290	E069	25964
chr2	11798356	11798698	E069	31074
chr2	11722763	11723626	E071	-43656
chr2	11724035	11724158	E071	-43124
chr2	11724161	11724885	E071	-42397
chr2	11752644	11752718	E071	-14564
chr2	11761335	11762002	E071	-5280
chr2	11722105	11722220	E072	-45062
chr2	11722277	11722627	E072	-44655
chr2	11722763	11723626	E072	-43656
chr2	11724035	11724158	E072	-43124
chr2	11724161	11724885	E072	-42397
chr2	11761335	11762002	E072	-5280
chr2	11798087	11798174	E072	30805
chr2	11761335	11762002	E074	-5280
chr2	11792033	11792415	E074	24751
chr2	11816221	11816658	E074	48939
chr2	11816764	11816929	E074	49482
chr2	11816957	11817012	E074	49675
chr2	11792033	11792415	E081	24751
chr2	11792745	11792992	E081	25463
chr2	11793246	11793290	E081	25964
chr2	11792033	11792415	E082	24751
chr2	11792745	11792992	E082	25463
chr2	11793246	11793290	E082	25964

rs7562399