SNP Detail Info-rs7571858

Organism: Homo sapiens

Alleles: G>A / G>T

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G==0421 (12605/29884,GnomAD)
G==0415 (12107/29116,TOPMED)
G==0438 (2192/5008,1000G)
G==0448 (1725/3854,ALSPAC)
G==0456 (1692/3708,TWINSUK)

Position: chr2:59542138 (GRCh38.p7) (2p16.1)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.333	T=0.667
1000Genomes	American	Sub	694	G=0.460	T=0.540
1000Genomes	East Asian	Sub	1008	G=0.526	T=0.474
1000Genomes	Europe	Sub	1006	G=0.454	T=0.546
1000Genomes	Global	Study-wide	5008	G=0.438	T=0.562
1000Genomes	South Asian	Sub	978	G=0.460	T=0.540
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.448	T=0.552
The Genome Aggregation Database	African	Sub	8694	G=0.354	T=0.646
The Genome Aggregation Database	American	Sub	836	G=0.500	T=0.50,
The Genome Aggregation Database	East Asian	Sub	1610	G=0.538	T=0.462
The Genome Aggregation Database	Europe	Sub	18444	G=0.438	T=0.561
The Genome Aggregation Database	Global	Study-wide	29884	G=0.421	T=0.578
The Genome Aggregation Database	Other	Sub	300	G=0.490	T=0.51,
Trans-Omics for Precision Medicine	Global	Study-wide	29116	G=0.415	T=0.584
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.456	T=0.544

PMID	Title	Author	Journal
23743675	A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.	Kapoor M	Hum Genet

SNP ID	p-value	Traits	Study
rs7571858	3.48E-05	alcohol consumption	23743675

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs7571858