rs7571858

Homo sapiens
G>A / G>T
None
Check p-value
SNV (Single Nucleotide Variation)
G==0421 (12605/29884,GnomAD)
G==0415 (12107/29116,TOPMED)
G==0438 (2192/5008,1000G)
G==0448 (1725/3854,ALSPAC)
G==0456 (1692/3708,TWINSUK)
chr2:59542138 (GRCh38.p7) (2p16.1)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 2NC_000002.12:g.59542138G>A
GRCh38.p7 chr 2NC_000002.12:g.59542138G>T
GRCh37.p13 chr 2NC_000002.11:g.59769273G>A
GRCh37.p13 chr 2NC_000002.11:g.59769273G>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.333T=0.667
1000GenomesAmericanSub694G=0.460T=0.540
1000GenomesEast AsianSub1008G=0.526T=0.474
1000GenomesEuropeSub1006G=0.454T=0.546
1000GenomesGlobalStudy-wide5008G=0.438T=0.562
1000GenomesSouth AsianSub978G=0.460T=0.540
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.448T=0.552
The Genome Aggregation DatabaseAfricanSub8694G=0.354T=0.646
The Genome Aggregation DatabaseAmericanSub836G=0.500T=0.50,
The Genome Aggregation DatabaseEast AsianSub1610G=0.538T=0.462
The Genome Aggregation DatabaseEuropeSub18444G=0.438T=0.561
The Genome Aggregation DatabaseGlobalStudy-wide29884G=0.421T=0.578
The Genome Aggregation DatabaseOtherSub300G=0.490T=0.51,
Trans-Omics for Precision MedicineGlobalStudy-wide29116G=0.415T=0.584
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.456T=0.544
PMID Title Author Journal
23743675A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.Kapoor MHum Genet

P-Value

SNP ID p-value Traits Study
rs75718583.48E-05alcohol consumption23743675

eQTL of rs7571858 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs7571858 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.